Variant report

Variant	rs11903115
Chromosome Location	chr2:180810361-180810362
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:180808241..180810462-chr2:180810582..180812457,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11885126	0.91[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11885510	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11891760	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11895445	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs16867109	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16867113	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16867118	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16867124	0.91[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16867127	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16867128	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16867130	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16867134	0.92[YRI][hapmap];0.84[AFR][1000 genomes]
rs3934054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58024677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58408527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58896105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59814364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002305	chr2:180568558-180812846	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv875472	chr2:180696414-181024926	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv875473	chr2:180696414-181055597	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
4	nsv521134	chr2:180746041-180848488	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1006598	chr2:180766983-180923051	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv531444	chr2:180796233-181434590	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180783800-180811800	Weak transcription	Left Ventricle	heart
2	chr2:180792000-180816400	Weak transcription	Aorta	Aorta
3	chr2:180796000-180810600	Weak transcription	Fetal Intestine Small	intestine
4	chr2:180796400-180815000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr2:180797000-180810600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr2:180797000-180815800	Weak transcription	Right Ventricle	heart
7	chr2:180797400-180815200	Weak transcription	Colon Smooth Muscle	Colon
8	chr2:180797800-180811400	Weak transcription	Fetal Lung	lung
9	chr2:180797800-180818200	Weak transcription	Esophagus	oesophagus
10	chr2:180798000-180813800	Weak transcription	Brain Angular Gyrus	brain
11	chr2:180798000-180814200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr2:180798000-180816200	Weak transcription	Pancreas	Pancrea
13	chr2:180798200-180815000	Weak transcription	Brain Substantia Nigra	brain
14	chr2:180798600-180816000	Weak transcription	Fetal Heart	heart
15	chr2:180799600-180813400	Weak transcription	HMEC	breast
16	chr2:180800000-180812800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr2:180800200-180816200	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr2:180801000-180813600	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr2:180801000-180836400	Weak transcription	Psoas Muscle	Psoas
20	chr2:180802000-180811600	Weak transcription	Brain Hippocampus Middle	brain
21	chr2:180802000-180813400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr2:180802000-180814400	Weak transcription	Fetal Brain Female	brain
23	chr2:180803400-180843600	Weak transcription	Fetal Brain Male	brain
24	chr2:180804000-180815000	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr2:180804200-180816200	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr2:180804400-180811800	Weak transcription	Primary T cells from cord blood	blood
27	chr2:180805000-180816000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr2:180805600-180812600	Weak transcription	NHEK	skin
29	chr2:180805600-180831800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr2:180806600-180813800	Weak transcription	Brain Germinal Matrix	brain
31	chr2:180807000-180819400	Strong transcription	Primary B cells from cord blood	blood
32	chr2:180807000-180858400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr2:180807200-180816200	Weak transcription	Lung	lung
34	chr2:180807200-180816200	Weak transcription	Rectal Smooth Muscle	rectum
35	chr2:180807400-180810400	Strong transcription	Primary hematopoietic stem cells	blood
36	chr2:180807400-180810400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr2:180807400-180810400	Strong transcription	Rectal Mucosa Donor 31	rectum
38	chr2:180807400-180811800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr2:180807400-180814000	Weak transcription	Hela-S3	cervix
40	chr2:180807400-180819200	Strong transcription	Adipose Nuclei	Adipose
41	chr2:180807800-180816000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr2:180807800-180820400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr2:180807800-180820600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr2:180808000-180819800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr2:180808000-180819800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr2:180808200-180811800	Weak transcription	Ovary	ovary
47	chr2:180808200-180818200	Weak transcription	Colonic Mucosa	Colon
48	chr2:180808200-180840000	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr2:180808200-180860400	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr2:180808400-180810600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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