Variant report

Variant	rs11914985
Chromosome Location	chr3:105749443-105749444
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11926864	1.00[AMR][1000 genomes]
rs2655051	1.00[AMR][1000 genomes]
rs340075	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs340076	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs340077	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6788751	1.00[EUR][1000 genomes]
rs966147	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877312	chr3:105560638-105916506	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv999883	chr3:105687634-106007792	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1011888	chr3:105718749-106331879	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv536679	chr3:105718749-106331879	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105744400-105749600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:105744400-105757200	Weak transcription	Left Ventricle	heart
3	chr3:105744600-105749600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr3:105744600-105749600	Weak transcription	HMEC	breast
5	chr3:105748200-105751000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:105748800-105750200	Enhancers	NHEK	skin
7	chr3:105749000-105750200	Enhancers	NHDF-Ad	bronchial
8	chr3:105749200-105749600	Enhancers	A549	lung
9	chr3:105749200-105749800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
10	chr3:105749200-105750000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:105749200-105750000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:105749200-105750000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr3:105749200-105750200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:105749200-105750200	Enhancers	HSMM	muscle
15	chr3:105749400-105750000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr3:105749400-105750000	Enhancers	NHLF	lung
17	chr3:105749400-105750200	Enhancers	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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