Variant report

Variant	rs340075
Chromosome Location	chr3:105727173-105727174
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11914985	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11926864	1.00[AMR][1000 genomes]
rs2655051	1.00[AMR][1000 genomes]
rs340076	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs340077	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6788751	1.00[EUR][1000 genomes]
rs966147	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877312	chr3:105560638-105916506	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv999883	chr3:105687634-106007792	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1011888	chr3:105718749-106331879	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv536679	chr3:105718749-106331879	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105718400-105729200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:105723800-105728600	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr3:105723800-105733000	Weak transcription	K562	blood
4	chr3:105724000-105727800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr3:105724000-105729200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr3:105724200-105727600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:105725400-105728400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:105725400-105729800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:105725400-105732000	Weak transcription	NHDF-Ad	bronchial
10	chr3:105725800-105732200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr3:105726400-105732600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr3:105726800-105727600	Enhancers	Fetal Stomach	stomach
13	chr3:105727000-105728400	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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