Variant report

Variant	rs11916703
Chromosome Location	chr3:22821079-22821080
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12107605	0.98[ASN][1000 genomes]
rs12107606	0.98[ASN][1000 genomes]
rs12108183	0.98[ASN][1000 genomes]
rs1450304	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1450306	0.98[ASN][1000 genomes]
rs1450308	0.98[ASN][1000 genomes]
rs1597451	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1597452	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17012124	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17012167	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2122471	0.98[ASN][1000 genomes]
rs2122472	0.98[ASN][1000 genomes]
rs28864513	0.98[ASN][1000 genomes]
rs28875337	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4470547	0.98[ASN][1000 genomes]
rs4858053	0.83[ASN][1000 genomes]
rs4858448	0.88[ASN][1000 genomes]
rs4858453	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4858454	0.98[ASN][1000 genomes]
rs4858456	0.85[ASN][1000 genomes]
rs7652748	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460477	chr3:22532660-22920246	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv589941	chr3:22532660-22920246	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1014828	chr3:22554271-23033498	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv589946	chr3:22600086-22865347	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1011446	chr3:22612682-22864885	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1008306	chr3:22762892-23026548	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv999013	chr3:22788951-22880732	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1014275	chr3:22796228-22880732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv522799	chr3:22804837-22865347	Enhancers Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:22820800-22821400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr3:22821000-22821600	Enhancers	HMEC	breast

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