Variant report

Variant	rs4858053
Chromosome Location	chr3:22875477-22875478
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:22874201..22876969-chr3:22880901..22883798,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1114382	1.00[EUR][1000 genomes]
rs11916703	0.83[ASN][1000 genomes]
rs12107605	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12107606	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12108183	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1450304	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1450306	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1450308	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1597451	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1597452	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17012124	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17012167	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17012235	0.92[ASN][1000 genomes]
rs2122471	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2122472	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28419496	1.00[EUR][1000 genomes]
rs28864513	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28875337	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4470547	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4858453	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4858454	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4858456	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4858459	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4858460	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4858461	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4858465	1.00[EUR][1000 genomes]
rs4858466	1.00[EUR][1000 genomes]
rs7624850	1.00[EUR][1000 genomes]
rs7652748	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460477	chr3:22532660-22920246	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv589941	chr3:22532660-22920246	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1014828	chr3:22554271-23033498	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1008306	chr3:22762892-23026548	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv999013	chr3:22788951-22880732	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1014275	chr3:22796228-22880732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:22866800-22877600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:22874600-22875800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:22874600-22878400	Enhancers	Fetal Intestine Small	intestine
4	chr3:22874800-22875800	Weak transcription	Fetal Lung	lung
5	chr3:22875200-22875600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr3:22875200-22877000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr3:22875200-22877400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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