Variant report

Variant	rs17012167
Chromosome Location	chr3:22865586-22865587
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11916703	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12107605	0.83[ASN][1000 genomes]
rs12107606	0.83[ASN][1000 genomes]
rs12108183	0.83[ASN][1000 genomes]
rs1450304	0.83[ASN][1000 genomes]
rs1450306	0.83[ASN][1000 genomes]
rs1450308	0.83[ASN][1000 genomes]
rs1597451	0.83[ASN][1000 genomes]
rs1597452	0.83[ASN][1000 genomes]
rs17012124	0.83[ASN][1000 genomes]
rs17012235	0.87[ASN][1000 genomes]
rs2122471	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2122472	0.83[ASN][1000 genomes]
rs28864513	0.83[ASN][1000 genomes]
rs28875337	0.83[ASN][1000 genomes]
rs4470547	0.83[ASN][1000 genomes]
rs4858053	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4858453	0.83[ASN][1000 genomes]
rs4858454	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4858456	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4858459	0.90[ASN][1000 genomes]
rs4858460	0.90[ASN][1000 genomes]
rs4858461	0.90[ASN][1000 genomes]
rs7652748	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460477	chr3:22532660-22920246	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv589941	chr3:22532660-22920246	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1014828	chr3:22554271-23033498	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1008306	chr3:22762892-23026548	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv999013	chr3:22788951-22880732	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1014275	chr3:22796228-22880732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:22861000-22866600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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