Variant report

Variant	rs11917056
Chromosome Location	chr3:155155395-155155396
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11924434	1.00[AMR][1000 genomes]
rs11926745	1.00[AMR][1000 genomes]
rs11926950	1.00[AMR][1000 genomes]
rs11927134	1.00[AMR][1000 genomes]
rs11927163	1.00[YRI][hapmap]
rs11927323	1.00[AMR][1000 genomes]
rs11928514	1.00[AMR][1000 genomes]
rs16824956	1.00[AMR][1000 genomes]
rs16824961	1.00[AMR][1000 genomes]
rs16824962	1.00[AMR][1000 genomes]
rs57951243	1.00[AMR][1000 genomes]
rs61570538	1.00[AMR][1000 genomes]
rs72996912	1.00[AMR][1000 genomes]
rs72996914	1.00[AMR][1000 genomes]
rs73009787	1.00[AMR][1000 genomes]
rs73009795	1.00[AMR][1000 genomes]
rs73011503	1.00[AMR][1000 genomes]
rs73011509	1.00[AMR][1000 genomes]
rs73011519	1.00[AMR][1000 genomes]
rs73011523	1.00[AMR][1000 genomes]
rs73011526	1.00[AMR][1000 genomes]
rs73011527	1.00[AMR][1000 genomes]
rs7623131	1.00[AMR][1000 genomes]
rs7628745	1.00[AMR][1000 genomes]
rs7629380	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999994	chr3:154579254-155175303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv532664	chr3:154588346-155162615	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1000753	chr3:154848433-155207022	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv536773	chr3:154848433-155207022	Enhancers Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv877679	chr3:155128968-155204939	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155152800-155155400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr3:155153200-155155800	Enhancers	Muscle Satellite Cultured Cells	--
3	chr3:155153400-155155600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:155153400-155155600	Enhancers	Osteobl	bone
5	chr3:155153800-155155600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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