Variant report

Variant	rs7623131
Chromosome Location	chr3:155222022-155222023
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11917056	1.00[AMR][1000 genomes]
rs11924434	1.00[AMR][1000 genomes]
rs11926745	1.00[AMR][1000 genomes]
rs11926950	1.00[AMR][1000 genomes]
rs11927134	1.00[AMR][1000 genomes]
rs11927323	1.00[AMR][1000 genomes]
rs11928514	1.00[AMR][1000 genomes]
rs16824956	1.00[AMR][1000 genomes]
rs16824961	1.00[AMR][1000 genomes]
rs16824962	1.00[AMR][1000 genomes]
rs57951243	1.00[AMR][1000 genomes]
rs61570538	1.00[AMR][1000 genomes]
rs72996912	1.00[AMR][1000 genomes]
rs72996914	1.00[AMR][1000 genomes]
rs73009787	1.00[AMR][1000 genomes]
rs73009795	1.00[AMR][1000 genomes]
rs73011503	1.00[AMR][1000 genomes]
rs73011509	1.00[AMR][1000 genomes]
rs73011519	1.00[AMR][1000 genomes]
rs73011523	1.00[AMR][1000 genomes]
rs73011526	1.00[AMR][1000 genomes]
rs73011527	1.00[AMR][1000 genomes]
rs7628745	1.00[AMR][1000 genomes]
rs7629380	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763309	chr3:155193454-155256770	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155195000-155230400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:155196200-155231600	Weak transcription	Gastric	stomach
3	chr3:155198400-155230600	Weak transcription	Fetal Intestine Large	intestine
4	chr3:155198800-155230800	Weak transcription	Pancreas	Pancrea
5	chr3:155199000-155229800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr3:155200600-155230200	Weak transcription	Duodenum Mucosa	Duodenum
7	chr3:155200800-155223600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:155200800-155251400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr3:155202400-155230000	Weak transcription	A549	lung
10	chr3:155206800-155224000	Strong transcription	Dnd41	blood
11	chr3:155208000-155230200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr3:155210600-155222600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:155210800-155237600	Weak transcription	Fetal Kidney	kidney
14	chr3:155212800-155230000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr3:155215000-155230200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr3:155215000-155230200	Weak transcription	Fetal Intestine Small	intestine
17	chr3:155216600-155230200	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr3:155217400-155230000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr3:155218600-155222200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr3:155218600-155229800	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr3:155218600-155230000	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr3:155218600-155230000	Weak transcription	Thymus	Thymus
23	chr3:155218600-155236600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr3:155219200-155222400	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr3:155220400-155222400	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr3:155221400-155222800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr3:155221600-155222200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr3:155221600-155223200	Strong transcription	Fetal Thymus	thymus
29	chr3:155221800-155223400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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