Variant report

Variant	rs16824962
Chromosome Location	chr3:155162394-155162395
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155161165..155164024-chr3:155164178..155166734,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11917056	1.00[AMR][1000 genomes]
rs11924434	1.00[AMR][1000 genomes]
rs11926745	1.00[AMR][1000 genomes]
rs11926950	1.00[AMR][1000 genomes]
rs11927134	1.00[AMR][1000 genomes]
rs11927323	1.00[AMR][1000 genomes]
rs11928514	1.00[AMR][1000 genomes]
rs11928539	0.85[YRI][hapmap];0.89[AFR][1000 genomes]
rs16824956	0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16824961	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16824965	0.90[YRI][hapmap];0.89[AFR][1000 genomes]
rs16824986	0.90[YRI][hapmap];0.89[AFR][1000 genomes]
rs16824992	0.90[YRI][hapmap];0.89[AFR][1000 genomes]
rs57461710	0.89[AFR][1000 genomes]
rs57951243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57985049	0.89[AFR][1000 genomes]
rs61570538	1.00[AMR][1000 genomes]
rs72996912	1.00[AMR][1000 genomes]
rs72996914	1.00[AMR][1000 genomes]
rs73009787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73009792	0.86[AFR][1000 genomes]
rs73009795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73011503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73011509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73011512	0.89[AFR][1000 genomes]
rs73011513	0.89[AFR][1000 genomes]
rs73011515	0.89[AFR][1000 genomes]
rs73011519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73011523	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73011525	0.98[AFR][1000 genomes]
rs73011526	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73011527	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73011528	0.91[AFR][1000 genomes]
rs7623131	1.00[AMR][1000 genomes]
rs7628745	1.00[AMR][1000 genomes]
rs7629380	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999994	chr3:154579254-155175303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv532664	chr3:154588346-155162615	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1000753	chr3:154848433-155207022	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv536773	chr3:154848433-155207022	Enhancers Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv877679	chr3:155128968-155204939	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155155600-155167400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:155161800-155162600	Weak transcription	Osteobl	bone

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