Variant report

Variant	rs11919788
Chromosome Location	chr3:82840038-82840039
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11919733	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11923841	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11927432	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12330257	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12330267	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12330268	0.87[AMR][1000 genomes]
rs12330682	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6548847	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6548851	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6548852	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9818649	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9837897	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9851494	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9871050	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013820	chr3:82175705-82968181	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2830308	chr3:82741198-83269730	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82838400-82840600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:82839600-82840800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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