Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11919733	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11919788	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11923841	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11927432	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12330267	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12330268	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12330682	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17020111	1.00[EUR][1000 genomes]
rs17020191	1.00[EUR][1000 genomes]
rs1947750	0.84[EUR][1000 genomes]
rs4856226	0.85[EUR][1000 genomes]
rs6548847	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6548851	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6548852	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6772781	1.00[EUR][1000 genomes]
rs6782239	1.00[CEU][hapmap];0.86[YRI][hapmap]
rs6797450	1.00[EUR][1000 genomes]
rs6803797	1.00[EUR][1000 genomes]
rs7631696	1.00[EUR][1000 genomes]
rs9818649	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9837897	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9851494	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9871050	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013820	chr3:82175705-82968181	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv834750	chr3:82645025-82802783	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv877045	chr3:82728631-82808608	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2830308	chr3:82741198-83269730	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82782400-82792400	Weak transcription	Gastric	stomach
2	chr3:82790000-82792200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:82790000-82792400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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