Variant report

Variant	rs1947750
Chromosome Location	chr3:82758659-82758660
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11919733	0.84[EUR][1000 genomes]
rs11923841	0.84[EUR][1000 genomes]
rs11927432	0.84[EUR][1000 genomes]
rs12330257	0.84[EUR][1000 genomes]
rs12330267	0.84[EUR][1000 genomes]
rs12330268	0.84[EUR][1000 genomes]
rs12330682	0.84[EUR][1000 genomes]
rs17020111	0.84[EUR][1000 genomes]
rs17020191	0.84[EUR][1000 genomes]
rs6548847	0.84[EUR][1000 genomes]
rs6548851	0.84[EUR][1000 genomes]
rs6772781	0.84[EUR][1000 genomes]
rs6797450	0.84[EUR][1000 genomes]
rs6803797	0.84[EUR][1000 genomes]
rs7631696	0.84[EUR][1000 genomes]
rs9818649	0.84[EUR][1000 genomes]
rs9837897	0.84[EUR][1000 genomes]
rs9851494	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013820	chr3:82175705-82968181	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv834750	chr3:82645025-82802783	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv460734	chr3:82707769-82766788	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
4	nsv590781	chr3:82707769-82766788	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
5	nsv1010803	chr3:82708244-82766788	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
6	nsv1008386	chr3:82712103-82768690	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
7	nsv590782	chr3:82715343-82766788	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
8	nsv1005871	chr3:82719273-82767152	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
9	nsv536607	chr3:82719273-82767152	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
10	nsv877045	chr3:82728631-82808608	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv2830308	chr3:82741198-83269730	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82758200-82758800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:82758200-82759000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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