Variant report

Variant	rs17020111
Chromosome Location	chr3:82775131-82775132
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11919733	1.00[EUR][1000 genomes]
rs11923841	1.00[EUR][1000 genomes]
rs11927432	1.00[EUR][1000 genomes]
rs12330257	1.00[EUR][1000 genomes]
rs12330267	1.00[EUR][1000 genomes]
rs12330268	1.00[EUR][1000 genomes]
rs12330682	1.00[EUR][1000 genomes]
rs17020191	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1947750	0.84[EUR][1000 genomes]
rs4856226	0.85[EUR][1000 genomes]
rs6548847	1.00[EUR][1000 genomes]
rs6548851	1.00[EUR][1000 genomes]
rs6772781	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6797450	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6803797	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7631696	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9818649	1.00[EUR][1000 genomes]
rs9837897	1.00[EUR][1000 genomes]
rs9851494	1.00[EUR][1000 genomes]
rs9871050	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013820	chr3:82175705-82968181	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv834750	chr3:82645025-82802783	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv877045	chr3:82728631-82808608	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2830308	chr3:82741198-83269730	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv963565	chr3:82766875-82790137	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82775000-82775400	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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