Variant report
| Variant | rs6548851 |
|---|---|
| Chromosome Location | chr3:82822915-82822916 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs11919733 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11919788 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11923841 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11927432 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12330257 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12330267 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12330268 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12330682 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17020111 | 1.00[EUR][1000 genomes] |
| rs17020191 | 1.00[EUR][1000 genomes] |
| rs1947750 | 0.84[EUR][1000 genomes] |
| rs4856226 | 0.85[EUR][1000 genomes] |
| rs6548847 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6548852 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6772781 | 1.00[EUR][1000 genomes] |
| rs6782239 | 1.00[CEU][hapmap];0.92[YRI][hapmap] |
| rs6797450 | 1.00[EUR][1000 genomes] |
| rs6803797 | 1.00[EUR][1000 genomes] |
| rs7631696 | 1.00[EUR][1000 genomes] |
| rs9818649 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9837897 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9851494 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9871050 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1013820 | chr3:82175705-82968181 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | esv2830308 | chr3:82741198-83269730 | Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:82820400-82823200 | Weak transcription | Aorta | Aorta |
