Variant report

Variant	rs17020191
Chromosome Location	chr3:82853198-82853199
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11919733	1.00[EUR][1000 genomes]
rs11923841	1.00[EUR][1000 genomes]
rs11927432	1.00[EUR][1000 genomes]
rs12330257	1.00[EUR][1000 genomes]
rs12330267	1.00[EUR][1000 genomes]
rs12330268	1.00[EUR][1000 genomes]
rs12330682	1.00[EUR][1000 genomes]
rs17020111	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1947750	0.84[EUR][1000 genomes]
rs4856226	0.85[EUR][1000 genomes]
rs6548847	1.00[EUR][1000 genomes]
rs6548851	1.00[EUR][1000 genomes]
rs6772781	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6782239	1.00[CEU][hapmap]
rs6797450	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6803797	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7631696	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9818649	1.00[EUR][1000 genomes]
rs9837897	1.00[EUR][1000 genomes]
rs9851494	1.00[EUR][1000 genomes]
rs9871050	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013820	chr3:82175705-82968181	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2830308	chr3:82741198-83269730	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82852400-82853400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:82852400-82853400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr3:82853000-82853400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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