Variant report

Variant	rs11921266
Chromosome Location	chr3:156840511-156840512
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156806550..156808602-chr3:156838713..156841197,3	MCF-7	breast:
2	chr3:156802474..156811977-chr3:156831792..156841748,16	K562	blood:
3	chr3:156503620..156506032-chr3:156837954..156840511,2	K562	blood:
4	chr3:156392014..156393878-chr3:156839101..156841015,2	K562	blood:
5	chr3:156391768..156393756-chr3:156838455..156841015,3	K562	blood:

Variant related genes	Relation type
ENSG00000243926	Chromatin interaction
ENSG00000163659	Chromatin interaction
ENSG00000241135	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11927421	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57370275	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7642442	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
2	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156819600-156846400	Weak transcription	Fetal Kidney	kidney
2	chr3:156833600-156846600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:156834200-156842800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:156834200-156842800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:156834200-156844400	Weak transcription	Right Ventricle	heart
6	chr3:156834200-156845400	Weak transcription	Right Atrium	heart
7	chr3:156836600-156842000	Enhancers	Fetal Intestine Large	intestine
8	chr3:156836800-156847200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr3:156837000-156850400	Enhancers	Fetal Intestine Small	intestine
10	chr3:156837200-156846600	Enhancers	Fetal Heart	heart
11	chr3:156837400-156845200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr3:156838000-156841000	Enhancers	Fetal Lung	lung
13	chr3:156838000-156842000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr3:156838000-156843800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr3:156838200-156842200	Enhancers	Liver	Liver
16	chr3:156838200-156843000	Weak transcription	K562	blood
17	chr3:156838200-156844800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr3:156838400-156840800	Enhancers	A549	lung
19	chr3:156838400-156846000	Weak transcription	Lung	lung
20	chr3:156838400-156846800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr3:156838400-156851400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr3:156838600-156845400	Weak transcription	Colonic Mucosa	Colon
23	chr3:156838600-156845400	Enhancers	NHEK	skin
24	chr3:156838800-156840800	Weak transcription	Left Ventricle	heart
25	chr3:156838800-156841800	Enhancers	Stomach Mucosa	stomach
26	chr3:156838800-156842000	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr3:156838800-156846000	Enhancers	HepG2	liver
28	chr3:156839000-156840800	Enhancers	Duodenum Mucosa	Duodenum
29	chr3:156839200-156840800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr3:156839200-156841200	Enhancers	HSMM	muscle
31	chr3:156839200-156841400	Enhancers	NH-A	brain
32	chr3:156839200-156848200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr3:156839400-156840600	Enhancers	Hela-S3	cervix
34	chr3:156839400-156842000	Enhancers	Muscle Satellite Cultured Cells	--
35	chr3:156839600-156840800	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr3:156839600-156841400	Enhancers	NHLF	lung
37	chr3:156839800-156840600	Enhancers	Psoas Muscle	Psoas
38	chr3:156839800-156840600	Enhancers	Small Intestine	intestine
39	chr3:156839800-156840600	Enhancers	HSMMtube	muscle
40	chr3:156839800-156840600	Enhancers	Osteobl	bone
41	chr3:156839800-156841800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr3:156839800-156841800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr3:156839800-156842000	Enhancers	Placenta Amnion	Placenta Amnion
44	chr3:156840000-156840800	Enhancers	Sigmoid Colon	Sigmoid Colon
45	chr3:156840000-156841800	Enhancers	Pancreas	Pancrea
46	chr3:156840200-156841200	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr3:156840200-156841200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr3:156840200-156843800	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr3:156840200-156844600	Weak transcription	Fetal Thymus	thymus
50	chr3:156840200-156845400	Weak transcription	NHDF-Ad	bronchial

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