Variant report

Variant	rs57370275
Chromosome Location	chr3:156846640-156846641
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:156540522..156545318-chr3:156845576..156848701,4	MCF-7	breast:
2	chr3:156797096..156799390-chr3:156846319..156848431,2	MCF-7	breast:
3	chr11:5830212..5830820-chr3:156846082..156846678,2	HCT-116	colon:
4	chr3:156843888..156849892-chr3:156876155..156879435,6	MCF-7	breast:
5	chr3:156813654..156815672-chr3:156844907..156847092,2	K562	blood:
6	chr3:156845282..156848198-chr3:156867064..156868855,3	K562	blood:
7	chr3:156805521..156807475-chr3:156845446..156847445,2	MCF-7	breast:
8	chr3:156805163..156809241-chr3:156846112..156851758,6	K562	blood:
9	chr3:156805135..156808634-chr3:156846380..156850000,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000197980	Chromatin interaction
ENSG00000241135	Chromatin interaction
ENSG00000163660	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11921266	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11927421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7642442	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
2	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156836800-156847200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:156837000-156850400	Enhancers	Fetal Intestine Small	intestine
3	chr3:156838400-156846800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:156838400-156851400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:156839200-156848200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:156840400-156847800	Enhancers	HMEC	breast
7	chr3:156840600-156847800	Weak transcription	Small Intestine	intestine
8	chr3:156841000-156846800	Weak transcription	Fetal Lung	lung
9	chr3:156841200-156846800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr3:156841200-156848000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:156842400-156850200	Enhancers	Fetal Intestine Large	intestine
12	chr3:156842400-156851600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr3:156842400-156855600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr3:156842600-156849000	Enhancers	Pancreas	Pancrea
15	chr3:156842600-156852600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:156842800-156848000	Enhancers	HSMM	muscle
17	chr3:156843000-156855600	Enhancers	Osteobl	bone
18	chr3:156844400-156849000	Enhancers	Left Ventricle	heart
19	chr3:156844600-156847200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:156844600-156849800	Enhancers	Fetal Thymus	thymus
21	chr3:156844600-156851000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr3:156845000-156849000	Enhancers	Right Ventricle	heart
23	chr3:156845200-156847000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr3:156845200-156848000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr3:156845200-156848000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr3:156845200-156848000	Enhancers	Duodenum Mucosa	Duodenum
27	chr3:156845200-156849000	Enhancers	Placenta	Placenta
28	chr3:156845200-156849200	Enhancers	Placenta Amnion	Placenta Amnion
29	chr3:156845200-156850200	Enhancers	NHLF	lung
30	chr3:156845200-156851400	Enhancers	HSMMtube	muscle
31	chr3:156845400-156846800	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr3:156845400-156847800	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr3:156845400-156847800	Enhancers	Adipose Nuclei	Adipose
34	chr3:156845400-156849000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr3:156845400-156849000	Enhancers	Gastric	stomach
36	chr3:156845400-156849000	Enhancers	Right Atrium	heart
37	chr3:156845400-156849000	Enhancers	K562	blood
38	chr3:156845400-156849600	Enhancers	GM12878-XiMat	blood
39	chr3:156845400-156855600	Enhancers	NHDF-Ad	bronchial
40	chr3:156845600-156847200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
41	chr3:156845600-156847800	Enhancers	Stomach Mucosa	stomach
42	chr3:156845600-156848000	Enhancers	Primary T helper cells fromperipheralblood	blood
43	chr3:156845600-156848200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
44	chr3:156845600-156849400	Enhancers	Thymus	Thymus
45	chr3:156845600-156854800	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr3:156845600-156855600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr3:156845800-156847000	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr3:156845800-156847000	Enhancers	Primary T helper naive cells from peripheral blood	blood
49	chr3:156845800-156847800	Enhancers	Primary T cells fromperipheralblood	blood
50	chr3:156845800-156848000	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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