Variant report

Variant	rs7642442
Chromosome Location	chr3:156848300-156848301
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:156809695..156811487-chr3:156846940..156849408,2	MCF-7	breast:
2	chr3:156540522..156545318-chr3:156845576..156848701,4	MCF-7	breast:
3	chr3:156797096..156799390-chr3:156846319..156848431,2	MCF-7	breast:
4	chr3:156806301..156807164-chr3:156848146..156848706,2	MCF-7	breast:
5	chr3:156795318..156796174-chr3:156848039..156849028,2	MCF-7	breast:
6	chr3:156848000..156849785-chr3:156874764..156877211,2	K562	blood:
7	chr3:156543426..156545697-chr3:156846673..156848583,2	K562	blood:
8	chr3:156843888..156849892-chr3:156876155..156879435,6	MCF-7	breast:
9	chr3:156847773..156850327-chr3:156876742..156880332,3	K562	blood:
10	chr3:156391796..156394279-chr3:156847106..156849379,3	MCF-7	breast:
11	chr15:29359433..29360119-chr3:156848174..156849045,2	K562	blood:
12	chr3:156847564..156849135-chr3:156876855..156879075,2	MCF-7	breast:
13	chr3:156847271..156850096-chr3:156851185..156855376,4	K562	blood:
14	chr3:156805163..156809241-chr3:156846112..156851758,6	K562	blood:
15	chr3:156805135..156808634-chr3:156846380..156850000,4	MCF-7	breast:
16	chr3:156391690..156393986-chr3:156846773..156851627,7	MCF-7	breast:
17	chr3:156799617..156800140-chr3:156847839..156848602,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000197980	Chromatin interaction
ENSG00000243926	Chromatin interaction
ENSG00000241544	Chromatin interaction
ENSG00000163659	Chromatin interaction
ENSG00000241135	Chromatin interaction
ENSG00000163660	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11921266	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11927421	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57370275	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873791	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
2	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156837000-156850400	Enhancers	Fetal Intestine Small	intestine
2	chr3:156838400-156851400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:156842400-156850200	Enhancers	Fetal Intestine Large	intestine
4	chr3:156842400-156851600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:156842400-156855600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr3:156842600-156849000	Enhancers	Pancreas	Pancrea
7	chr3:156842600-156852600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:156843000-156855600	Enhancers	Osteobl	bone
9	chr3:156844400-156849000	Enhancers	Left Ventricle	heart
10	chr3:156844600-156849800	Enhancers	Fetal Thymus	thymus
11	chr3:156844600-156851000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr3:156845000-156849000	Enhancers	Right Ventricle	heart
13	chr3:156845200-156849000	Enhancers	Placenta	Placenta
14	chr3:156845200-156849200	Enhancers	Placenta Amnion	Placenta Amnion
15	chr3:156845200-156850200	Enhancers	NHLF	lung
16	chr3:156845200-156851400	Enhancers	HSMMtube	muscle
17	chr3:156845400-156849000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr3:156845400-156849000	Enhancers	Gastric	stomach
19	chr3:156845400-156849000	Enhancers	Right Atrium	heart
20	chr3:156845400-156849000	Enhancers	K562	blood
21	chr3:156845400-156849600	Enhancers	GM12878-XiMat	blood
22	chr3:156845400-156855600	Enhancers	NHDF-Ad	bronchial
23	chr3:156845600-156849400	Enhancers	Thymus	Thymus
24	chr3:156845600-156854800	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr3:156845600-156855600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr3:156845800-156849800	Enhancers	Sigmoid Colon	Sigmoid Colon
27	chr3:156845800-156851000	Enhancers	HUVEC	blood vessel
28	chr3:156846000-156848400	Flanking Active TSS	HepG2	liver
29	chr3:156846000-156849000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr3:156846000-156849000	Enhancers	Lung	lung
31	chr3:156846000-156849600	Enhancers	Spleen	Spleen
32	chr3:156846000-156850000	Enhancers	Primary T cells from cord blood	blood
33	chr3:156846000-156852800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
34	chr3:156846200-156848400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
35	chr3:156846200-156849200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr3:156846200-156849800	Enhancers	NHEK	skin
37	chr3:156846400-156849000	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr3:156846400-156849200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr3:156846400-156849400	Enhancers	Primary B cells from peripheral blood	blood
40	chr3:156846400-156849400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr3:156846400-156851200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr3:156846800-156848400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
43	chr3:156846800-156849200	Enhancers	Cortex derived primary cultured neurospheres	brain
44	chr3:156846800-156849200	Enhancers	Liver	Liver
45	chr3:156846800-156849600	Enhancers	Fetal Lung	lung
46	chr3:156846800-156850200	Weak transcription	Aorta	Aorta
47	chr3:156846800-156851400	Enhancers	NH-A	brain
48	chr3:156846800-156855000	Weak transcription	Fetal Kidney	kidney
49	chr3:156847000-156848400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr3:156847000-156848400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--

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