Variant report

Variant	rs11923819
Chromosome Location	chr3:144383140-144383141
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11915632	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11925589	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1865775	0.87[AMR][1000 genomes]
rs56058409	0.87[AMR][1000 genomes]
rs58281320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59076875	0.87[AMR][1000 genomes]
rs59216322	0.87[AMR][1000 genomes]
rs61246679	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61578555	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73004176	0.87[AMR][1000 genomes]
rs73004180	0.87[AMR][1000 genomes]
rs73004190	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73004200	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73006022	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73006037	0.87[AMR][1000 genomes]
rs73006043	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73006049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73006050	0.87[AMR][1000 genomes]
rs73873523	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7622351	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532633	chr3:143802417-144440646	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3379740	chr3:144225847-144433818	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv2757895	chr3:144236202-144391387	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv2759185	chr3:144236202-144391387	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144382600-144383200	Flanking Active TSS	Brain Hippocampus Middle	brain
2	chr3:144382800-144383200	Enhancers	Brain Anterior Caudate	brain
3	chr3:144382800-144383200	Flanking Active TSS	Brain Substantia Nigra	brain
4	chr3:144382800-144383400	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr3:144383000-144383200	Enhancers	Brain Cingulate Gyrus	brain
6	chr3:144383000-144383400	Enhancers	Brain Angular Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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