Variant report

Variant	rs73006050
Chromosome Location	chr3:144396524-144396525
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11915632	0.87[AMR][1000 genomes]
rs11923819	0.87[AMR][1000 genomes]
rs11925589	0.87[AMR][1000 genomes]
rs16855667	0.87[AMR][1000 genomes]
rs1865775	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56058409	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58281320	0.87[AMR][1000 genomes]
rs59076875	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59216322	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61246679	0.87[AMR][1000 genomes]
rs61578555	0.87[AMR][1000 genomes]
rs73004176	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73004180	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73004190	0.87[AMR][1000 genomes]
rs73004200	0.87[AMR][1000 genomes]
rs73006022	0.87[AMR][1000 genomes]
rs73006037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73006043	0.87[AMR][1000 genomes]
rs73006049	0.87[AMR][1000 genomes]
rs73873523	0.87[AMR][1000 genomes]
rs7622351	0.87[AMR][1000 genomes]
rs7638559	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532633	chr3:143802417-144440646	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3379740	chr3:144225847-144433818	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144395400-144396800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr3:144395800-144396600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr3:144396000-144396600	Enhancers	Brain Angular Gyrus	brain
4	chr3:144396000-144396600	Enhancers	Brain Hippocampus Middle	brain
5	chr3:144396000-144396800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:144396000-144396800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:144396000-144396800	Enhancers	Brain Cingulate Gyrus	brain
8	chr3:144396000-144396800	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr3:144396200-144396600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr3:144396200-144396600	Enhancers	Brain Substantia Nigra	brain
11	chr3:144396200-144396600	Enhancers	HUVEC	blood vessel
12	chr3:144396200-144396600	Enhancers	NHDF-Ad	bronchial
13	chr3:144396200-144396800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:144396400-144396800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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