Variant report

Variant	rs61246679
Chromosome Location	chr3:144357058-144357059
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11915632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11923819	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11925589	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1865775	0.87[AMR][1000 genomes]
rs56058409	0.87[AMR][1000 genomes]
rs58281320	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59076875	0.87[AMR][1000 genomes]
rs59216322	0.87[AMR][1000 genomes]
rs61578555	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73004176	0.87[AMR][1000 genomes]
rs73004180	0.87[AMR][1000 genomes]
rs73004190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73004200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73006022	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73006037	0.87[AMR][1000 genomes]
rs73006043	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73006049	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73006050	0.87[AMR][1000 genomes]
rs73873523	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7622351	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs800070	0.84[AFR][1000 genomes]
rs800073	0.84[AFR][1000 genomes]
rs800074	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532633	chr3:143802417-144440646	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3379740	chr3:144225847-144433818	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv2757895	chr3:144236202-144391387	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv2759185	chr3:144236202-144391387	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144356000-144362600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr3:144356000-144362800	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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