Variant report

Variant	rs11931239
Chromosome Location	chr4:20399430-20399431
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10006112	0.86[ASN][1000 genomes]
rs10938797	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11723573	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12502618	0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs12505297	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs12643858	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13138008	0.81[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs13142826	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.95[MEX][hapmap];0.96[MKK][hapmap];0.82[TSI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13143737	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap]
rs13143964	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16869591	1.00[CEU][hapmap];0.89[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.89[MEX][hapmap];0.91[MKK][hapmap];0.83[TSI][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2031140	0.87[ASN][1000 genomes]
rs2031141	0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4132472	0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs4235282	0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4280728	1.00[ASW][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.96[MKK][hapmap];0.86[ASN][1000 genomes]
rs4318645	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4328909	0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4490454	0.87[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4696954	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs4696955	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4696956	1.00[ASW][hapmap];0.94[CHB][hapmap];0.84[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.96[MKK][hapmap];0.87[ASN][1000 genomes]
rs4697160	0.94[CHB][hapmap];0.91[JPT][hapmap];0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4697161	0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4697162	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs6447955	1.00[CHB][hapmap];0.84[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.84[MEX][hapmap];0.89[ASN][1000 genomes]
rs6447958	1.00[GIH][hapmap]
rs67917249	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67927265	0.82[AFR][1000 genomes]
rs6821204	0.84[ASN][1000 genomes]
rs6853187	0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7440671	0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7663703	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.83[TSI][hapmap];0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7683698	0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7687359	1.00[ASW][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.95[MKK][hapmap];0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7687583	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7692874	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7694984	0.84[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20393200-20405800	Weak transcription	Fetal Lung	lung
2	chr4:20393200-20408800	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:20395600-20404800	Weak transcription	NHDF-Ad	bronchial
4	chr4:20395600-20405000	Weak transcription	Brain Anterior Caudate	brain
5	chr4:20397000-20399800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr4:20399400-20399600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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