Variant report

Variant	rs12643858
Chromosome Location	chr4:20378309-20378310
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10006112	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10938797	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11723573	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11931239	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12502618	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12505297	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13138008	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13142826	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13143964	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16869591	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2031140	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2031141	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4132472	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4235282	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4280728	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4318645	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4328909	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4490454	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4696954	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4696955	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4696956	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4697160	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4697161	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4697162	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6447955	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67917249	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6821204	0.86[AMR][1000 genomes]
rs6853187	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7440671	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7663703	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7683698	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7687359	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7687583	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7692874	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7694984	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1842873	chr4:20361842-20399168	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20376200-20379200	Weak transcription	NHDF-Ad	bronchial
2	chr4:20376200-20386600	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:20376400-20381200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr4:20376600-20386000	Weak transcription	Fetal Lung	lung
5	chr4:20378200-20379200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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