Variant report

Variant	rs11932133
Chromosome Location	chr4:95792794-95792795
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95785938..95787441-chr4:95791928..95794895,2	K562	blood:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10016377	1.00[CHB][hapmap]
rs10017538	1.00[CHB][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];0.83[TSI][hapmap]
rs1011959	0.86[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1011961	0.87[CEU][hapmap];0.93[CHD][hapmap];0.88[MEX][hapmap];0.90[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10433971	0.88[CHB][hapmap];0.84[EUR][1000 genomes]
rs11932660	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11934094	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs11936506	0.82[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs11937571	0.82[EUR][1000 genomes]
rs11945660	0.82[EUR][1000 genomes]
rs11947569	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs12512097	0.82[ASN][1000 genomes]
rs13104253	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13105915	0.83[EUR][1000 genomes]
rs13109358	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13123144	0.81[EUR][1000 genomes]
rs13126112	0.81[EUR][1000 genomes]
rs13127184	0.82[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.88[EUR][1000 genomes]
rs13127472	0.86[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs13140476	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1444933	0.87[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1541372	0.87[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17022351	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];0.85[TSI][hapmap];0.89[EUR][1000 genomes]
rs17022471	0.86[EUR][1000 genomes]
rs17022477	0.87[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17022488	0.86[EUR][1000 genomes]
rs17022547	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17022573	0.81[EUR][1000 genomes]
rs17428994	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1859156	0.83[ASW][hapmap];0.87[CEU][hapmap];0.89[MEX][hapmap];0.83[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2044327	0.81[EUR][1000 genomes]
rs2240036	0.87[CEU][hapmap];0.92[EUR][1000 genomes]
rs2719176	0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs28403938	0.91[ASN][1000 genomes]
rs28534678	0.81[EUR][1000 genomes]
rs34158313	0.83[EUR][1000 genomes]
rs34628453	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34867390	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35306626	0.83[EUR][1000 genomes]
rs35402441	0.88[EUR][1000 genomes]
rs35992199	0.86[EUR][1000 genomes]
rs3755872	0.85[EUR][1000 genomes]
rs3775005	0.86[EUR][1000 genomes]
rs3775008	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3775009	0.93[CHD][hapmap];0.86[EUR][1000 genomes]
rs3775010	0.93[CHD][hapmap]
rs3775012	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4401454	1.00[CHB][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];0.83[TSI][hapmap]
rs4455423	0.94[GIH][hapmap]
rs6815228	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6816886	0.86[EUR][1000 genomes]
rs6820744	0.93[CHD][hapmap];0.85[EUR][1000 genomes]
rs6849640	0.82[EUR][1000 genomes]
rs72669081	0.88[EUR][1000 genomes]
rs72669099	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs739729	0.86[EUR][1000 genomes]
rs7669822	0.81[EUR][1000 genomes]
rs7673527	0.94[ASN][1000 genomes]
rs7675431	0.81[EUR][1000 genomes]
rs7685361	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7690226	0.93[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7698986	0.82[EUR][1000 genomes]
rs9307149	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95781200-95810600	Weak transcription	Fetal Kidney	kidney
2	chr4:95790200-95793000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr4:95791400-95792800	Enhancers	A549	lung
4	chr4:95791400-95794000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr4:95792000-95793000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:95792000-95793000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:95792400-95793200	Enhancers	HUES48 Cell Line	embryonic stem cell

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