Variant report

Variant	rs7690226
Chromosome Location	chr4:95838109-95838110
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95828080..95830968-chr4:95838059..95840958,2	MCF-7	breast:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1011959	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1011961	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10213566	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11932133	0.93[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11932660	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13104253	0.86[EUR][1000 genomes]
rs13105915	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13109358	0.82[EUR][1000 genomes]
rs13123144	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13126112	0.85[EUR][1000 genomes]
rs13127184	0.81[EUR][1000 genomes]
rs13127472	0.81[EUR][1000 genomes]
rs13140476	0.83[EUR][1000 genomes]
rs1444932	1.00[ASN][1000 genomes]
rs1444933	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1541372	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17022351	0.82[EUR][1000 genomes]
rs17022471	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17022477	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17022488	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17022547	1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17022573	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17428994	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17429308	0.85[CEU][hapmap]
rs1859156	0.93[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2023833	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2044327	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2240035	0.96[ASN][1000 genomes]
rs2240036	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28534678	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28711183	1.00[ASN][1000 genomes]
rs34158313	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34628453	0.84[EUR][1000 genomes]
rs34867390	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35306626	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35402441	0.81[EUR][1000 genomes]
rs35992199	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3755872	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3775005	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3775008	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3775009	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3775010	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3775012	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3775013	1.00[ASN][1000 genomes]
rs3775014	1.00[ASN][1000 genomes]
rs3775016	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3775023	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs3775027	0.94[ASN][1000 genomes]
rs3775028	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3821961	0.94[ASN][1000 genomes]
rs3821962	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs61352301	1.00[ASN][1000 genomes]
rs6532516	0.96[ASN][1000 genomes]
rs6815228	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6816886	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6820744	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6849640	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72669081	0.81[EUR][1000 genomes]
rs72669099	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73836195	0.94[ASN][1000 genomes]
rs739729	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs739730	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7661079	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7669822	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7675431	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7685361	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7698986	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9307149	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs972409	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv492312	chr4:95823124-96128327	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95816800-95845800	Weak transcription	A549	lung
2	chr4:95831000-95855000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:95836000-95839400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:95836800-95838200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:95837800-95838400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:95837800-95841000	Weak transcription	Pancreas	Pancrea
7	chr4:95838000-95838200	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr4:95838000-95838400	ZNF genes & repeats	Ovary	ovary

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