Variant report

Variant	rs3821962
Chromosome Location	chr4:95845632-95845633
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1011959	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1011961	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10213566	1.00[CHB][hapmap];0.81[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11932660	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs13105915	0.81[ASN][1000 genomes]
rs13123144	0.96[ASN][1000 genomes]
rs1444932	0.96[ASN][1000 genomes]
rs1444933	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1541372	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17022471	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17022477	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17022488	0.89[ASN][1000 genomes]
rs17022547	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17022573	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17022601	0.81[ASW][hapmap]
rs1859156	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2023833	0.96[ASN][1000 genomes]
rs2044327	0.96[ASN][1000 genomes]
rs2240035	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2240036	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs28534678	0.96[ASN][1000 genomes]
rs28711183	0.96[ASN][1000 genomes]
rs34158313	0.89[ASN][1000 genomes]
rs34867390	0.81[ASN][1000 genomes]
rs35306626	0.98[ASN][1000 genomes]
rs35992199	0.89[ASN][1000 genomes]
rs3755872	0.89[ASN][1000 genomes]
rs3775005	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3775008	0.89[ASN][1000 genomes]
rs3775009	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3775010	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3775012	0.88[ASN][1000 genomes]
rs3775013	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3775014	0.96[ASN][1000 genomes]
rs3775016	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3775023	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs3775027	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3775028	1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3821961	0.89[ASN][1000 genomes]
rs61352301	0.96[ASN][1000 genomes]
rs6532516	0.92[ASN][1000 genomes]
rs6815228	0.89[ASN][1000 genomes]
rs6816886	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6820744	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6849640	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs72669099	0.84[ASN][1000 genomes]
rs73836195	0.89[ASN][1000 genomes]
rs739729	0.89[ASN][1000 genomes]
rs739730	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7661079	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7669822	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7675431	0.96[ASN][1000 genomes]
rs7685361	0.89[ASN][1000 genomes]
rs7690226	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7698986	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9307149	0.92[ASN][1000 genomes]
rs972409	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv492312	chr4:95823124-96128327	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95816800-95845800	Weak transcription	A549	lung
2	chr4:95831000-95855000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:95838400-95848200	Weak transcription	Ovary	ovary
4	chr4:95842200-95848400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr4:95845600-95846200	Enhancers	NHEK	skin
6	chr4:95845600-95846400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:95845600-95846400	Enhancers	HMEC	breast

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