Variant report

Variant	rs28711183
Chromosome Location	chr4:95837205-95837206
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95823535..95826379-chr4:95835891..95838030,4	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1011959	0.94[ASN][1000 genomes]
rs1011961	0.94[ASN][1000 genomes]
rs10213566	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11932660	1.00[ASN][1000 genomes]
rs13105915	0.85[ASN][1000 genomes]
rs13123144	0.96[ASN][1000 genomes]
rs1444932	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1444933	1.00[ASN][1000 genomes]
rs1541372	0.94[ASN][1000 genomes]
rs17022471	0.94[ASN][1000 genomes]
rs17022477	0.94[ASN][1000 genomes]
rs17022488	0.94[ASN][1000 genomes]
rs17022547	0.96[ASN][1000 genomes]
rs17022573	0.98[ASN][1000 genomes]
rs17428994	0.84[ASN][1000 genomes]
rs1859156	0.96[ASN][1000 genomes]
rs2023833	0.96[ASN][1000 genomes]
rs2044327	0.96[ASN][1000 genomes]
rs2240035	0.96[ASN][1000 genomes]
rs2240036	0.96[ASN][1000 genomes]
rs28534678	0.96[ASN][1000 genomes]
rs34158313	0.94[ASN][1000 genomes]
rs34867390	0.85[ASN][1000 genomes]
rs35306626	0.98[ASN][1000 genomes]
rs35992199	0.94[ASN][1000 genomes]
rs3755872	0.94[ASN][1000 genomes]
rs3775005	0.94[ASN][1000 genomes]
rs3775008	0.94[ASN][1000 genomes]
rs3775009	0.94[ASN][1000 genomes]
rs3775010	0.94[ASN][1000 genomes]
rs3775012	0.92[ASN][1000 genomes]
rs3775013	1.00[ASN][1000 genomes]
rs3775014	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3775016	0.96[ASN][1000 genomes]
rs3775023	0.81[ASN][1000 genomes]
rs3775027	0.94[ASN][1000 genomes]
rs3775028	0.94[ASN][1000 genomes]
rs3821961	0.94[ASN][1000 genomes]
rs3821962	0.96[ASN][1000 genomes]
rs61352301	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6532516	0.96[ASN][1000 genomes]
rs6815228	0.94[ASN][1000 genomes]
rs6816886	0.94[ASN][1000 genomes]
rs6820744	0.94[ASN][1000 genomes]
rs6849640	0.96[ASN][1000 genomes]
rs72669099	0.88[ASN][1000 genomes]
rs73836195	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs739729	0.94[ASN][1000 genomes]
rs739730	0.94[ASN][1000 genomes]
rs7661079	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7669822	0.96[ASN][1000 genomes]
rs7675431	0.96[ASN][1000 genomes]
rs7685361	0.94[ASN][1000 genomes]
rs7690226	1.00[ASN][1000 genomes]
rs7698986	0.96[ASN][1000 genomes]
rs9307149	0.96[ASN][1000 genomes]
rs972409	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv492312	chr4:95823124-96128327	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95816800-95845800	Weak transcription	A549	lung
2	chr4:95831000-95837600	Weak transcription	Fetal Kidney	kidney
3	chr4:95831000-95855000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:95835200-95837600	Weak transcription	Thymus	Thymus
5	chr4:95836000-95838000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr4:95836000-95839400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:95836800-95838200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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