Variant report

Variant	rs17429308
Chromosome Location	chr4:95831071-95831072
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1011959	1.00[CEU][hapmap]
rs1011961	0.93[CEU][hapmap]
rs11932660	0.85[CEU][hapmap]
rs13105913	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13105915	0.81[AMR][1000 genomes]
rs13114040	0.91[EUR][1000 genomes]
rs13119758	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13120952	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13122133	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13123144	0.82[EUR][1000 genomes]
rs13126112	0.86[EUR][1000 genomes]
rs13133713	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1444933	0.94[CEU][hapmap]
rs1541372	0.94[CEU][hapmap]
rs17022471	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs17022477	0.94[CEU][hapmap]
rs17022488	0.84[EUR][1000 genomes]
rs17022573	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs17428994	0.86[CEU][hapmap];0.80[EUR][1000 genomes]
rs17429196	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17429252	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17501058	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1859156	0.93[CEU][hapmap]
rs2023833	0.81[EUR][1000 genomes]
rs2044327	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2240036	0.94[CEU][hapmap]
rs28534678	0.82[EUR][1000 genomes]
rs34158313	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34628453	0.80[EUR][1000 genomes]
rs35306626	0.84[EUR][1000 genomes]
rs35400524	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35992199	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3755872	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3775005	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3775009	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3775016	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs67037000	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6816886	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6820744	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6849640	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71601244	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72669099	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs739729	1.00[CEU][hapmap];0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7669822	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7675431	0.81[EUR][1000 genomes]
rs7690226	0.85[CEU][hapmap]
rs7698986	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv492312	chr4:95823124-96128327	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95811000-95833600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:95816800-95845800	Weak transcription	A549	lung
3	chr4:95830000-95831200	Enhancers	HMEC	breast
4	chr4:95830000-95833000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr4:95830600-95831200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:95831000-95831400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:95831000-95837600	Weak transcription	Fetal Kidney	kidney
8	chr4:95831000-95855000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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