Variant report

Variant	rs17429252
Chromosome Location	chr4:95821655-95821656
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95821022..95823696-chr4:95823793..95825387,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1011959	0.93[CEU][hapmap]
rs1011961	0.87[CEU][hapmap]
rs13105913	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13105915	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13114040	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs13119758	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13120952	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13122133	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13123144	0.84[EUR][1000 genomes]
rs13126112	0.89[EUR][1000 genomes]
rs13133713	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13140476	0.81[EUR][1000 genomes]
rs1444933	0.88[CEU][hapmap]
rs1541372	0.88[CEU][hapmap]
rs17022471	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17022477	0.88[CEU][hapmap]
rs17022488	0.86[EUR][1000 genomes]
rs17022573	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs17428994	0.86[CEU][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17429196	1.00[CEU][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17429308	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17501058	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1859156	0.87[CEU][hapmap]
rs2023833	0.82[EUR][1000 genomes]
rs2044327	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2240036	0.88[CEU][hapmap]
rs28534678	0.84[EUR][1000 genomes]
rs34158313	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34628453	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34867390	0.82[EUR][1000 genomes]
rs35306626	0.86[EUR][1000 genomes]
rs35400524	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35992199	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3755872	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3775005	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3775009	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3775016	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs41367045	0.87[YRI][hapmap];0.85[AFR][1000 genomes]
rs67037000	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6816886	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6820744	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6849640	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71601244	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72669099	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs739729	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7669822	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7675431	0.84[EUR][1000 genomes]
rs7698986	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95811000-95833600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:95811200-95824800	Weak transcription	Aorta	Aorta
3	chr4:95812400-95830400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:95816800-95845800	Weak transcription	A549	lung
5	chr4:95818400-95826600	Weak transcription	Pancreas	Pancrea
6	chr4:95818600-95822400	Weak transcription	Fetal Heart	heart
7	chr4:95818600-95828400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr4:95818600-95830000	Weak transcription	Ovary	ovary
9	chr4:95818600-95830600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:95820400-95826800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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