Variant report

Variant	rs13122133
Chromosome Location	chr4:95857273-95857274
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11932090	1.00[ASN][1000 genomes]
rs11940026	1.00[ASN][1000 genomes]
rs12512681	1.00[ASN][1000 genomes]
rs13105913	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13114040	0.90[EUR][1000 genomes]
rs13119758	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13120868	1.00[ASN][1000 genomes]
rs13120952	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13123144	0.81[EUR][1000 genomes]
rs13126112	0.86[EUR][1000 genomes]
rs13133713	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13138219	1.00[ASN][1000 genomes]
rs13138431	1.00[ASN][1000 genomes]
rs17022471	0.80[EUR][1000 genomes]
rs17022488	0.80[EUR][1000 genomes]
rs17022671	1.00[ASN][1000 genomes]
rs17429196	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17429252	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17429308	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17501058	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2023833	0.82[EUR][1000 genomes]
rs2044327	0.82[EUR][1000 genomes]
rs28534678	0.81[EUR][1000 genomes]
rs35247579	1.00[ASN][1000 genomes]
rs35306626	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35400524	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35716337	1.00[ASN][1000 genomes]
rs35858185	1.00[ASN][1000 genomes]
rs35992199	0.80[EUR][1000 genomes]
rs3775005	0.80[EUR][1000 genomes]
rs3775009	0.80[EUR][1000 genomes]
rs3775016	0.80[EUR][1000 genomes]
rs41367045	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs67037000	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6816886	0.80[EUR][1000 genomes]
rs6849640	0.84[AMR][1000 genomes]
rs6855185	1.00[ASN][1000 genomes]
rs71601244	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72669099	0.80[EUR][1000 genomes]
rs739729	0.80[EUR][1000 genomes]
rs7669822	0.81[EUR][1000 genomes]
rs7675431	0.81[EUR][1000 genomes]
rs7676775	1.00[ASN][1000 genomes]
rs7698986	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv492312	chr4:95823124-96128327	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv1014420	chr4:95853357-95886153	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv537189	chr4:95853357-95886153	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95849200-95861600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:95850800-95861000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr4:95853200-95860800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr4:95853400-95858200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr4:95853600-95857800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:95855600-95858000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:95855800-95858000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr4:95856000-95860800	Weak transcription	HUVEC	blood vessel
9	chr4:95856400-95857600	Enhancers	Aorta	Aorta
10	chr4:95856400-95858200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr4:95856400-95858600	Flanking Active TSS	A549	lung
12	chr4:95856600-95858400	Enhancers	Muscle Satellite Cultured Cells	--
13	chr4:95856800-95861200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr4:95857000-95857600	Weak transcription	HSMM	muscle
15	chr4:95857000-95860600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr4:95857000-95860800	Weak transcription	Osteobl	bone
17	chr4:95857200-95857400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links