Variant report

Variant	rs13109358
Chromosome Location	chr4:95779336-95779337
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10014566	0.81[ASN][1000 genomes]
rs10016377	0.81[ASN][1000 genomes]
rs10017538	0.81[ASN][1000 genomes]
rs10029723	0.81[ASN][1000 genomes]
rs1011959	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1011961	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10433971	0.83[ASN][1000 genomes]
rs11932133	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11934094	0.81[ASN][1000 genomes]
rs11936506	0.81[ASN][1000 genomes]
rs11937571	0.83[ASN][1000 genomes]
rs11942643	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11945660	0.83[ASN][1000 genomes]
rs11947569	0.83[ASN][1000 genomes]
rs13104253	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13105915	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13123144	0.88[EUR][1000 genomes]
rs13127184	0.85[ASN][1000 genomes]
rs13127472	0.85[ASN][1000 genomes]
rs13140476	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1444933	0.82[EUR][1000 genomes]
rs1541372	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17022351	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17022471	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17022477	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17022488	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17022547	0.81[EUR][1000 genomes]
rs17022573	0.89[EUR][1000 genomes]
rs17428994	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1859156	0.83[EUR][1000 genomes]
rs2023833	0.87[EUR][1000 genomes]
rs2044327	0.86[EUR][1000 genomes]
rs2240036	0.83[EUR][1000 genomes]
rs28403938	0.96[ASN][1000 genomes]
rs28534678	0.88[EUR][1000 genomes]
rs34158313	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34628453	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34867390	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35306626	0.91[EUR][1000 genomes]
rs35402441	0.85[ASN][1000 genomes]
rs35992199	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3755872	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3775005	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3775008	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3775009	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3775010	0.81[ASN][1000 genomes]
rs3775012	0.83[EUR][1000 genomes]
rs3775016	0.86[EUR][1000 genomes]
rs3821961	0.81[ASN][1000 genomes]
rs4401454	0.81[ASN][1000 genomes]
rs4455423	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4699740	0.81[ASN][1000 genomes]
rs6815228	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6816886	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6820744	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6849640	0.89[EUR][1000 genomes]
rs72669081	0.85[ASN][1000 genomes]
rs72669099	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs739729	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs739730	0.81[ASN][1000 genomes]
rs7669822	0.88[EUR][1000 genomes]
rs7673527	1.00[ASN][1000 genomes]
rs7675431	0.88[EUR][1000 genomes]
rs7685361	0.81[ASN][1000 genomes]
rs7690226	0.82[EUR][1000 genomes]
rs7698986	0.89[EUR][1000 genomes]
rs9307149	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95768800-95789600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:95769000-95789600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:95771800-95779800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:95775400-95779600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:95777600-95780000	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links