Variant report

Variant	rs11932855
Chromosome Location	chr4:128060804-128060805
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11941015	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11947846	1.00[AMR][1000 genomes]
rs72923277	1.00[AMR][1000 genomes]
rs72923281	1.00[AMR][1000 genomes]
rs72923284	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73846493	1.00[AMR][1000 genomes]
rs73849503	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879914	chr4:128005362-128123638	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128053400-128061000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:128060000-128061000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:128060000-128061200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr4:128060000-128062600	Weak transcription	HSMM	muscle
5	chr4:128060000-128063000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr4:128060200-128062600	Weak transcription	HSMMtube	muscle
7	chr4:128060600-128061000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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