Variant report

Variant	rs11933771
Chromosome Location	chr4:174164372-174164373
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:174163471..174166786-chr4:174169920..174173418,4	MCF-7	breast:
2	chr4:174163460..174165602-chr4:174169052..174171216,2	K562	blood:
3	chr4:174162885..174166050-chr4:174167322..174169124,3	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11931487	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11934228	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17059262	1.00[ASN][1000 genomes]
rs17059270	1.00[CHB][hapmap]
rs17059275	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2306465	1.00[CHB][hapmap]
rs2332671	1.00[CHB][hapmap]
rs28513634	1.00[ASN][1000 genomes]
rs4645199	1.00[CHB][hapmap]
rs4695828	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs56149013	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60973348	1.00[ASN][1000 genomes]
rs6816923	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6854376	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs72999507	1.00[EUR][1000 genomes]
rs72999520	1.00[ASN][1000 genomes]
rs967379	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799519	chr4:174090004-174173743	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174123600-174174200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr4:174128200-174169200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr4:174131800-174168600	Weak transcription	Gastric	stomach
4	chr4:174142200-174173400	Weak transcription	Lung	lung
5	chr4:174144200-174169000	Weak transcription	Fetal Intestine Large	intestine
6	chr4:174148000-174173400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:174150200-174173400	Weak transcription	Small Intestine	intestine
8	chr4:174151400-174171000	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr4:174152600-174173400	Weak transcription	Left Ventricle	heart
10	chr4:174153000-174169200	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr4:174153600-174171000	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr4:174156600-174165000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr4:174156600-174169000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr4:174156800-174165000	Weak transcription	Primary B cells from cord blood	blood
15	chr4:174156800-174169000	Weak transcription	Fetal Intestine Small	intestine
16	chr4:174157000-174166800	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr4:174157400-174166600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr4:174157400-174171000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr4:174158000-174169000	Weak transcription	Fetal Stomach	stomach
20	chr4:174158000-174169200	Weak transcription	Primary hematopoietic stem cells	blood
21	chr4:174158200-174172600	Weak transcription	K562	blood
22	chr4:174158600-174173000	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr4:174158800-174172200	Weak transcription	Brain Substantia Nigra	brain
24	chr4:174159200-174165000	Weak transcription	Fetal Muscle Leg	muscle
25	chr4:174159200-174165200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr4:174159200-174172600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr4:174159200-174172600	Weak transcription	Brain Hippocampus Middle	brain
28	chr4:174159200-174175200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr4:174159200-174204600	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr4:174159600-174189000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr4:174159800-174169200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr4:174160600-174164600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr4:174160600-174164800	Weak transcription	Brain Germinal Matrix	brain
34	chr4:174160800-174172400	Weak transcription	Brain Anterior Caudate	brain
35	chr4:174160800-174172600	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr4:174161200-174164600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr4:174162000-174168800	Enhancers	HUES64 Cell Line	embryonic stem cell
38	chr4:174162000-174169400	Enhancers	iPS-18 Cell Line	embryonic stem cell
39	chr4:174162600-174166200	Enhancers	Fetal Thymus	thymus
40	chr4:174162800-174164800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr4:174163000-174166000	Enhancers	HSMM	muscle
42	chr4:174163000-174168600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
43	chr4:174163200-174166800	Enhancers	iPS-20b Cell Line	embryonic stem cell
44	chr4:174163200-174168200	Enhancers	ES-I3 Cell Line	embryonic stem cell
45	chr4:174163400-174164400	Enhancers	HSMMtube	muscle
46	chr4:174163400-174165600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr4:174163400-174166000	Enhancers	Pancreatic Islets	Pancreatic Islet
48	chr4:174163400-174168400	Enhancers	HUES6 Cell Line	embryonic stem cell
49	chr4:174163600-174164400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr4:174163600-174164400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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