Variant report

Variant	rs6816923
Chromosome Location	chr4:174199490-174199491
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF7L2	chr4:174199349-174199596	HEK293	kidney:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:174192014..174194666-chr4:174199386..174201748,2	MCF-7	breast:
2	chr4:174197770..174199941-chr4:174205560..174208109,2	K562	blood:

Variant related genes	Relation type
GALNT7	TF binding region

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10005846	1.00[MEX][hapmap]
rs10019585	1.00[MEX][hapmap]
rs10520258	1.00[CEU][hapmap]
rs11931487	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11933771	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11934228	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[YRI][hapmap]
rs1585948	1.00[MEX][hapmap]
rs17059216	1.00[CEU][hapmap]
rs17059253	1.00[CEU][hapmap]
rs17059255	1.00[CEU][hapmap]
rs17059270	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17059275	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17059278	1.00[CEU][hapmap]
rs17059297	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2062018	1.00[MEX][hapmap]
rs2306465	1.00[CHB][hapmap]
rs28387978	1.00[EUR][1000 genomes]
rs28513634	0.84[AMR][1000 genomes]
rs28581661	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28605939	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34627061	0.86[ASN][1000 genomes]
rs4645199	1.00[CHB][hapmap]
rs4695828	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[YRI][hapmap]
rs4696058	1.00[MEX][hapmap]
rs56774970	0.86[ASN][1000 genomes]
rs59098468	0.86[ASN][1000 genomes]
rs59610063	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60501935	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61296981	0.86[ASN][1000 genomes]
rs61445751	0.86[ASN][1000 genomes]
rs6553687	1.00[CEU][hapmap]
rs6553690	1.00[EUR][1000 genomes]
rs6553691	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6810397	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs6810604	1.00[EUR][1000 genomes]
rs6814914	1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6824485	1.00[EUR][1000 genomes]
rs6828934	0.86[ASN][1000 genomes]
rs6840087	1.00[CEU][hapmap]
rs6854376	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs6856630	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs72993773	0.86[ASN][1000 genomes]
rs72994576	0.86[ASN][1000 genomes]
rs72994587	0.86[ASN][1000 genomes]
rs72999548	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73001541	1.00[ASN][1000 genomes]
rs73001544	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73001549	1.00[EUR][1000 genomes]
rs73001568	1.00[EUR][1000 genomes]
rs73003329	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73003331	1.00[ASN][1000 genomes]
rs73872518	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7670317	1.00[MEX][hapmap]
rs7691279	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7698574	1.00[MEX][hapmap]
rs965931	1.00[MEX][hapmap]
rs965932	1.00[MEX][hapmap]
rs967379	1.00[CHB][hapmap]

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174159200-174204600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:174171400-174202600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr4:174173600-174202200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr4:174186400-174208600	Weak transcription	Esophagus	oesophagus
5	chr4:174186600-174206800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr4:174186600-174207000	Weak transcription	Ovary	ovary
7	chr4:174186600-174207000	Weak transcription	Small Intestine	intestine
8	chr4:174186600-174209800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr4:174186800-174203600	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr4:174187400-174202400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr4:174191800-174204600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr4:174191800-174205000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr4:174192200-174205000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr4:174192800-174199600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr4:174193200-174200400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr4:174194600-174205600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr4:174195200-174206200	Weak transcription	Fetal Lung	lung
18	chr4:174195200-174207600	Weak transcription	Stomach Mucosa	stomach
19	chr4:174195400-174202600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr4:174196600-174201800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr4:174196600-174202000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr4:174196600-174202200	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr4:174196600-174202200	Weak transcription	Duodenum Mucosa	Duodenum
24	chr4:174196600-174202200	Weak transcription	Fetal Stomach	stomach
25	chr4:174196600-174202400	Weak transcription	Aorta	Aorta
26	chr4:174196600-174203200	Weak transcription	Fetal Intestine Large	intestine
27	chr4:174196600-174204400	Weak transcription	Lung	lung
28	chr4:174196800-174201600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr4:174196800-174201800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr4:174196800-174202000	Weak transcription	Dnd41	blood
31	chr4:174196800-174202200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr4:174196800-174202200	Weak transcription	Primary T cells from cord blood	blood
33	chr4:174196800-174202200	Weak transcription	GM12878-XiMat	blood
34	chr4:174196800-174202400	Weak transcription	Fetal Muscle Leg	muscle
35	chr4:174196800-174202600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr4:174196800-174203800	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr4:174196800-174210000	Weak transcription	Gastric	stomach
38	chr4:174197000-174201800	Weak transcription	Primary hematopoietic stem cells	blood
39	chr4:174197200-174200000	Weak transcription	Primary B cells from cord blood	blood
40	chr4:174197200-174201800	Weak transcription	K562	blood
41	chr4:174197200-174202200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr4:174197200-174202200	Weak transcription	Fetal Intestine Small	intestine
43	chr4:174198800-174199800	Weak transcription	Fetal Thymus	thymus
44	chr4:174199200-174202200	Weak transcription	Thymus	Thymus

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