Variant report

Variant	rs6553691
Chromosome Location	chr4:174205734-174205735
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:174197770..174199941-chr4:174205560..174208109,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10520258	1.00[CEU][hapmap]
rs11931487	1.00[CEU][hapmap]
rs11934228	1.00[CEU][hapmap]
rs17059216	1.00[CEU][hapmap]
rs17059253	1.00[CEU][hapmap]
rs17059255	1.00[CEU][hapmap]
rs17059270	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17059275	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17059278	1.00[CEU][hapmap]
rs17059297	1.00[EUR][1000 genomes]
rs28387978	1.00[EUR][1000 genomes]
rs28581661	0.95[EUR][1000 genomes]
rs28605939	1.00[EUR][1000 genomes]
rs4695828	1.00[CEU][hapmap]
rs59610063	1.00[EUR][1000 genomes]
rs60501935	1.00[EUR][1000 genomes]
rs6553687	1.00[CEU][hapmap]
rs6553690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6810397	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6810604	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6814914	1.00[EUR][1000 genomes]
rs6816923	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6824485	1.00[EUR][1000 genomes]
rs6840087	1.00[CEU][hapmap]
rs6856630	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs72999548	1.00[EUR][1000 genomes]
rs73001544	0.95[EUR][1000 genomes]
rs73001549	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73001556	0.96[ASN][1000 genomes]
rs73001568	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73003329	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73872518	0.91[EUR][1000 genomes]
rs7691279	1.00[EUR][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174186400-174208600	Weak transcription	Esophagus	oesophagus
2	chr4:174186600-174206800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr4:174186600-174207000	Weak transcription	Ovary	ovary
4	chr4:174186600-174207000	Weak transcription	Small Intestine	intestine
5	chr4:174186600-174209800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr4:174195200-174206200	Weak transcription	Fetal Lung	lung
7	chr4:174195200-174207600	Weak transcription	Stomach Mucosa	stomach
8	chr4:174196800-174210000	Weak transcription	Gastric	stomach
9	chr4:174201600-174211200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr4:174202800-174207400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:174203000-174206600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr4:174203000-174208600	Weak transcription	Aorta	Aorta
13	chr4:174203200-174214800	Weak transcription	Pancreas	Pancrea
14	chr4:174203600-174207200	Weak transcription	GM12878-XiMat	blood
15	chr4:174204600-174209000	ZNF genes & repeats	Thymus	Thymus
16	chr4:174204800-174205800	ZNF genes & repeats	Fetal Thymus	thymus
17	chr4:174204800-174209000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
18	chr4:174204800-174209200	ZNF genes & repeats	K562	blood
19	chr4:174205000-174209000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
20	chr4:174205000-174209200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
21	chr4:174205200-174209000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
22	chr4:174205400-174205800	ZNF genes & repeats	Brain Hippocampus Middle	brain
23	chr4:174205400-174209200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
24	chr4:174205600-174205800	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
25	chr4:174205600-174205800	ZNF genes & repeats	Dnd41	blood
26	chr4:174205600-174206000	ZNF genes & repeats	Fetal Intestine Large	intestine
27	chr4:174205600-174206200	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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