Variant report

Variant	rs4695828
Chromosome Location	chr4:174175525-174175526
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:174088925..174092173-chr4:174174802..174177053,3	K562	blood:
2	chr4:174162665..174164259-chr4:174174520..174177249,2	MCF-7	breast:
3	chr4:174149826..174151890-chr4:174175276..174177593,2	K562	blood:
4	chr4:174088925..174092414-chr4:174173684..174176835,4	K562	blood:
5	chr4:174173467..174175731-chr4:174253877..174256548,2	K562	blood:

Variant related genes	Relation type
ENSG00000109586	Chromatin interaction
ENSG00000245213	Chromatin interaction
ENSG00000164104	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10005846	1.00[MEX][hapmap]
rs10019585	1.00[MEX][hapmap]
rs10520258	1.00[CEU][hapmap]
rs11931487	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11933771	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11934228	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1585948	1.00[MEX][hapmap]
rs17059216	1.00[CEU][hapmap]
rs17059253	1.00[CEU][hapmap]
rs17059255	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17059262	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17059270	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17059275	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs17059278	1.00[CEU][hapmap]
rs2062018	1.00[MEX][hapmap]
rs2306465	1.00[CHB][hapmap]
rs28513634	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28581661	0.85[AFR][1000 genomes]
rs28651471	0.84[EUR][1000 genomes]
rs4645199	1.00[CHB][hapmap]
rs4696058	1.00[MEX][hapmap]
rs56149013	0.82[ASN][1000 genomes]
rs60973348	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6553687	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6553691	1.00[CEU][hapmap]
rs6810397	1.00[CEU][hapmap]
rs6816923	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[YRI][hapmap]
rs6840087	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6854376	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs6856630	1.00[CEU][hapmap]
rs72999520	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7670317	1.00[MEX][hapmap]
rs7698574	1.00[MEX][hapmap]
rs965931	1.00[MEX][hapmap]
rs965932	1.00[MEX][hapmap]
rs967379	1.00[CHB][hapmap]

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174159200-174204600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:174159600-174189000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:174163800-174184600	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr4:174164000-174177000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr4:174164000-174185600	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr4:174164000-174185800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr4:174164000-174186000	Weak transcription	Aorta	Aorta
8	chr4:174164200-174185400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr4:174164800-174178800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr4:174165600-174176200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr4:174165600-174182200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr4:174168200-174179000	Genic enhancers	Dnd41	blood
13	chr4:174168400-174177400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr4:174168600-174185800	Weak transcription	Brain Germinal Matrix	brain
15	chr4:174169400-174185400	Weak transcription	Fetal Intestine Large	intestine
16	chr4:174169600-174185600	Weak transcription	Fetal Stomach	stomach
17	chr4:174171400-174202600	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr4:174172000-174176800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr4:174172000-174183400	Weak transcription	Primary T cells from cord blood	blood
20	chr4:174172200-174185400	Weak transcription	Fetal Intestine Small	intestine
21	chr4:174173200-174176200	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr4:174173600-174175800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr4:174173600-174176400	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr4:174173600-174176800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr4:174173600-174177200	Weak transcription	Rectal Smooth Muscle	rectum
26	chr4:174173600-174185400	Weak transcription	Brain Angular Gyrus	brain
27	chr4:174173600-174185600	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr4:174173600-174186000	Weak transcription	Esophagus	oesophagus
29	chr4:174173600-174190400	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr4:174173600-174202200	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr4:174173800-174176200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr4:174173800-174178800	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr4:174173800-174178800	Weak transcription	A549	lung
34	chr4:174173800-174184800	Weak transcription	Duodenum Mucosa	Duodenum
35	chr4:174173800-174185400	Weak transcription	Brain Anterior Caudate	brain
36	chr4:174174000-174176200	Weak transcription	Small Intestine	intestine
37	chr4:174174000-174176400	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr4:174174000-174177000	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr4:174174000-174177000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr4:174174000-174178800	Weak transcription	K562	blood
41	chr4:174174000-174179400	Weak transcription	Primary B cells from cord blood	blood
42	chr4:174174200-174176400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr4:174174200-174176400	Weak transcription	Primary hematopoietic stem cells	blood
44	chr4:174174200-174176400	Weak transcription	Pancreas	Pancrea
45	chr4:174174200-174185400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr4:174174200-174185600	Weak transcription	Fetal Muscle Leg	muscle
47	chr4:174174400-174185400	Weak transcription	HSMMtube	muscle
48	chr4:174174600-174176200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr4:174174600-174176800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr4:174174600-174182200	Weak transcription	Stomach Mucosa	stomach

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