Variant report

Variant	rs17059278
Chromosome Location	chr4:174219290-174219291
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10520258	1.00[CEU][hapmap]
rs11931487	1.00[CEU][hapmap]
rs11934228	1.00[CEU][hapmap]
rs17059216	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17059253	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs17059255	1.00[CEU][hapmap]
rs17059270	1.00[CEU][hapmap]
rs17059275	1.00[CEU][hapmap]
rs4695828	1.00[CEU][hapmap]
rs6553687	1.00[CEU][hapmap]
rs6553691	1.00[CEU][hapmap]
rs6810397	1.00[CEU][hapmap]
rs6816923	1.00[CEU][hapmap]
rs6840087	1.00[CEU][hapmap]
rs6856630	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4610	chr4:174217026-174252627	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174206200-174229000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr4:174206400-174249400	Weak transcription	Fetal Kidney	kidney
3	chr4:174207800-174232600	Weak transcription	Ovary	ovary
4	chr4:174208800-174230400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr4:174209000-174220600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:174209000-174223000	Weak transcription	HSMM	muscle
7	chr4:174209000-174223600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr4:174209000-174225200	Weak transcription	Primary B cells from peripheral blood	blood
9	chr4:174209000-174228600	Weak transcription	Esophagus	oesophagus
10	chr4:174209000-174233400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr4:174209000-174235000	Weak transcription	Colonic Mucosa	Colon
12	chr4:174209200-174226800	Weak transcription	Fetal Muscle Trunk	muscle
13	chr4:174210200-174221200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr4:174210400-174226600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr4:174210400-174235400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr4:174210400-174253000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr4:174210400-174253000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr4:174210600-174228600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr4:174210600-174235200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr4:174210600-174235200	Weak transcription	Stomach Smooth Muscle	stomach
21	chr4:174210600-174240200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr4:174210600-174253000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr4:174210800-174223000	Weak transcription	Brain Anterior Caudate	brain
24	chr4:174210800-174228400	Weak transcription	Small Intestine	intestine
25	chr4:174210800-174236200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr4:174210800-174252000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr4:174211200-174225000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr4:174212200-174228000	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr4:174212200-174228200	Weak transcription	Fetal Intestine Small	intestine
30	chr4:174212400-174228200	Weak transcription	Fetal Stomach	stomach
31	chr4:174213000-174220600	Strong transcription	Fetal Thymus	thymus
32	chr4:174213000-174222600	Weak transcription	A549	lung
33	chr4:174213600-174237200	Weak transcription	NHEK	skin
34	chr4:174213800-174235400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr4:174214600-174220200	Strong transcription	Primary hematopoietic stem cells	blood
36	chr4:174214800-174219800	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr4:174214800-174220600	Strong transcription	Dnd41	blood
38	chr4:174214800-174220600	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr4:174214800-174235600	Weak transcription	Adipose Nuclei	Adipose
40	chr4:174215000-174228600	Weak transcription	Spleen	Spleen
41	chr4:174215000-174239400	Weak transcription	HUVEC	blood vessel
42	chr4:174215200-174225600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr4:174215200-174228000	Weak transcription	Fetal Muscle Leg	muscle
44	chr4:174215200-174228400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr4:174215200-174228600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr4:174215200-174228600	Weak transcription	Gastric	stomach
47	chr4:174215200-174228600	Weak transcription	Lung	lung
48	chr4:174215200-174232800	Weak transcription	Pancreas	Pancrea
49	chr4:174215200-174233400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr4:174215200-174235200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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