Variant report

Variant	rs10520258
Chromosome Location	chr4:174312749-174312750
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:174255166..174256701-chr4:174310825..174313675,2	MCF-7	breast:
2	chr4:174254582..174256890-chr4:174312064..174313894,2	K562	blood:
3	chr4:174252529..174254237-chr4:174310710..174314064,3	K562	blood:

Variant related genes	Relation type
ENSG00000164104	Chromatin interaction

rs_ID	r²[population]
rs11931487	1.00[CEU][hapmap]
rs11934228	1.00[CEU][hapmap]
rs17059216	1.00[CEU][hapmap]
rs17059253	1.00[CEU][hapmap]
rs17059255	1.00[CEU][hapmap]
rs17059270	1.00[CEU][hapmap]
rs17059275	1.00[CEU][hapmap]
rs17059278	1.00[CEU][hapmap]
rs1842559	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1842560	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28757390	1.00[EUR][1000 genomes]
rs4695828	1.00[CEU][hapmap]
rs4696066	1.00[EUR][1000 genomes]
rs6553687	1.00[CEU][hapmap]
rs6553691	1.00[CEU][hapmap]
rs6810397	1.00[CEU][hapmap]
rs6816923	1.00[CEU][hapmap]
rs6840087	1.00[CEU][hapmap]
rs6856630	1.00[CEU][hapmap]

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174293400-174321800	Weak transcription	Pancreas	Pancrea
2	chr4:174293400-174333200	Weak transcription	Gastric	stomach
3	chr4:174294000-174323800	Weak transcription	HSMMtube	muscle
4	chr4:174294000-174340400	Weak transcription	Fetal Intestine Large	intestine
5	chr4:174294200-174334400	Weak transcription	Right Ventricle	heart
6	chr4:174294200-174341600	Weak transcription	Fetal Intestine Small	intestine
7	chr4:174294400-174314200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr4:174294400-174317400	Weak transcription	Lung	lung
9	chr4:174294400-174318600	Weak transcription	Aorta	Aorta
10	chr4:174294400-174320200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr4:174294400-174322000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr4:174294400-174324600	Weak transcription	Thymus	Thymus
13	chr4:174294600-174338000	Weak transcription	Fetal Brain Male	brain
14	chr4:174294800-174318800	Weak transcription	Fetal Brain Female	brain
15	chr4:174294800-174334200	Weak transcription	Primary hematopoietic stem cells	blood
16	chr4:174294800-174336200	Weak transcription	Adipose Nuclei	Adipose
17	chr4:174294800-174341800	Weak transcription	Duodenum Mucosa	Duodenum
18	chr4:174295400-174331400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr4:174295400-174332200	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr4:174295400-174335800	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr4:174296800-174314600	Weak transcription	NHDF-Ad	bronchial
22	chr4:174297200-174318600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr4:174297200-174319800	Weak transcription	Fetal Thymus	thymus
24	chr4:174297200-174333400	Weak transcription	Fetal Muscle Leg	muscle
25	chr4:174297200-174338000	Weak transcription	Esophagus	oesophagus
26	chr4:174297400-174318600	Weak transcription	Colon Smooth Muscle	Colon
27	chr4:174297400-174338000	Weak transcription	Fetal Lung	lung
28	chr4:174299600-174314200	Weak transcription	Osteobl	bone
29	chr4:174300200-174315000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr4:174300200-174318800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr4:174300200-174339000	Weak transcription	Ovary	ovary
32	chr4:174300400-174333000	Weak transcription	Fetal Stomach	stomach
33	chr4:174301400-174318400	Weak transcription	HSMM	muscle
34	chr4:174303000-174313800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr4:174303000-174333200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr4:174303200-174314600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr4:174303200-174318800	Weak transcription	Rectal Smooth Muscle	rectum
38	chr4:174303400-174314600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr4:174306200-174326400	Weak transcription	Dnd41	blood
40	chr4:174308800-174313800	Weak transcription	Stomach Mucosa	stomach
41	chr4:174310200-174318600	Weak transcription	Brain Germinal Matrix	brain
42	chr4:174310200-174318800	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr4:174310800-174312800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr4:174311000-174314600	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr4:174311000-174318800	Weak transcription	Stomach Smooth Muscle	stomach
46	chr4:174312200-174312800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr4:174312200-174313200	Enhancers	Brain Inferior Temporal Lobe	brain
48	chr4:174312200-174313200	Enhancers	Brain Substantia Nigra	brain
49	chr4:174312200-174313200	Strong transcription	Left Ventricle	heart
50	chr4:174312200-174318000	Strong transcription	Primary monocytes fromperipheralblood	blood

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