Variant report

Variant	rs10019585
Chromosome Location	chr4:174301017-174301018
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:174255640..174257986-chr4:174300295..174301998,2	K562	blood:
2	chr4:174290227..174293106-chr4:174300524..174302666,2	MCF-7	breast:
3	chr4:174251329..174253900-chr4:174300222..174303986,3	K562	blood:

Variant related genes	Relation type
ENSG00000272870	Chromatin interaction
ENSG00000164105	Chromatin interaction
ENSG00000164104	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10005846	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10213665	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10866367	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11723871	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11934228	1.00[MEX][hapmap]
rs12504141	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12505441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1383629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1585947	1.00[CEU][hapmap];0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1585948	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs17059275	1.00[MEX][hapmap]
rs1947878	1.00[ASN][1000 genomes]
rs1987522	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2062018	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2288245	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2332670	0.86[AFR][1000 genomes]
rs2332671	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4645199	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4695828	1.00[MEX][hapmap]
rs4695831	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4695832	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4695833	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4696057	1.00[ASN][1000 genomes]
rs4696058	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4696059	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4696060	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4696062	1.00[CEU][hapmap];0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4696063	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6816923	1.00[MEX][hapmap]
rs6822239	1.00[ASN][1000 genomes]
rs6826267	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6849068	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6854376	1.00[MEX][hapmap]
rs7655155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7670317	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7696310	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7698574	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7699673	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs965931	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs965932	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs967379	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9996063	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174293400-174321800	Weak transcription	Pancreas	Pancrea
2	chr4:174293400-174333200	Weak transcription	Gastric	stomach
3	chr4:174294000-174302800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr4:174294000-174323800	Weak transcription	HSMMtube	muscle
5	chr4:174294000-174340400	Weak transcription	Fetal Intestine Large	intestine
6	chr4:174294200-174307600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr4:174294200-174309600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr4:174294200-174334400	Weak transcription	Right Ventricle	heart
9	chr4:174294200-174341600	Weak transcription	Fetal Intestine Small	intestine
10	chr4:174294400-174302800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr4:174294400-174314200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr4:174294400-174317400	Weak transcription	Lung	lung
13	chr4:174294400-174318600	Weak transcription	Aorta	Aorta
14	chr4:174294400-174320200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr4:174294400-174322000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr4:174294400-174324600	Weak transcription	Thymus	Thymus
17	chr4:174294600-174338000	Weak transcription	Fetal Brain Male	brain
18	chr4:174294800-174302200	Weak transcription	Brain Germinal Matrix	brain
19	chr4:174294800-174302200	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr4:174294800-174302400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr4:174294800-174302600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr4:174294800-174318800	Weak transcription	Fetal Brain Female	brain
23	chr4:174294800-174334200	Weak transcription	Primary hematopoietic stem cells	blood
24	chr4:174294800-174336200	Weak transcription	Adipose Nuclei	Adipose
25	chr4:174294800-174341800	Weak transcription	Duodenum Mucosa	Duodenum
26	chr4:174295200-174301200	Weak transcription	NHLF	lung
27	chr4:174295200-174302800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr4:174295400-174331400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr4:174295400-174332200	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr4:174295400-174335800	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr4:174295800-174312200	Weak transcription	Brain Substantia Nigra	brain
32	chr4:174295800-174312400	Weak transcription	Brain Angular Gyrus	brain
33	chr4:174296000-174306000	Weak transcription	Stomach Mucosa	stomach
34	chr4:174296000-174306400	Weak transcription	K562	blood
35	chr4:174296000-174312200	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr4:174296200-174312200	Weak transcription	Brain Cingulate Gyrus	brain
37	chr4:174296800-174301400	Strong transcription	HSMM	muscle
38	chr4:174296800-174314600	Weak transcription	NHDF-Ad	bronchial
39	chr4:174297000-174302200	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr4:174297200-174302200	Weak transcription	GM12878-XiMat	blood
41	chr4:174297200-174302400	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr4:174297200-174312400	Weak transcription	Brain Anterior Caudate	brain
43	chr4:174297200-174312400	Weak transcription	Brain Hippocampus Middle	brain
44	chr4:174297200-174318600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr4:174297200-174319800	Weak transcription	Fetal Thymus	thymus
46	chr4:174297200-174333400	Weak transcription	Fetal Muscle Leg	muscle
47	chr4:174297200-174338000	Weak transcription	Esophagus	oesophagus
48	chr4:174297400-174301200	Weak transcription	Fetal Muscle Trunk	muscle
49	chr4:174297400-174301400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr4:174297400-174302200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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