Variant report

Variant	rs11723871
Chromosome Location	chr4:174309136-174309137
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:174221776..174224319-chr4:174307795..174309389,2	K562	blood:
2	chr4:174291418..174293164-chr4:174307032..174309313,2	K562	blood:
3	chr4:174291880..174293600-chr4:174307331..174309992,2	MCF-7	breast:
4	chr4:174222819..174224476-chr4:174307676..174309389,2	K562	blood:

Variant related genes	Relation type
ENSG00000164105	Chromatin interaction
ENSG00000272870	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10005846	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10019585	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10213665	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10866367	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12504141	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12505441	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1383629	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[ASN][1000 genomes]
rs1585947	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs1585948	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[ASN][1000 genomes]
rs1947878	1.00[ASN][1000 genomes]
rs1987522	1.00[ASN][1000 genomes]
rs2062018	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2288245	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2332671	1.00[ASN][1000 genomes]
rs4645199	1.00[CHB][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4695831	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4695832	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4695833	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4696057	1.00[ASN][1000 genomes]
rs4696058	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4696059	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4696060	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[ASN][1000 genomes]
rs4696062	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs4696063	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6822239	1.00[ASN][1000 genomes]
rs6826267	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6849068	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7655155	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7670317	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7696310	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7698574	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7699673	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs965931	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs965932	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs967379	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[ASN][1000 genomes]
rs9996063	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174293400-174321800	Weak transcription	Pancreas	Pancrea
2	chr4:174293400-174333200	Weak transcription	Gastric	stomach
3	chr4:174294000-174323800	Weak transcription	HSMMtube	muscle
4	chr4:174294000-174340400	Weak transcription	Fetal Intestine Large	intestine
5	chr4:174294200-174309600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr4:174294200-174334400	Weak transcription	Right Ventricle	heart
7	chr4:174294200-174341600	Weak transcription	Fetal Intestine Small	intestine
8	chr4:174294400-174314200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:174294400-174317400	Weak transcription	Lung	lung
10	chr4:174294400-174318600	Weak transcription	Aorta	Aorta
11	chr4:174294400-174320200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr4:174294400-174322000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr4:174294400-174324600	Weak transcription	Thymus	Thymus
14	chr4:174294600-174338000	Weak transcription	Fetal Brain Male	brain
15	chr4:174294800-174318800	Weak transcription	Fetal Brain Female	brain
16	chr4:174294800-174334200	Weak transcription	Primary hematopoietic stem cells	blood
17	chr4:174294800-174336200	Weak transcription	Adipose Nuclei	Adipose
18	chr4:174294800-174341800	Weak transcription	Duodenum Mucosa	Duodenum
19	chr4:174295400-174331400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr4:174295400-174332200	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr4:174295400-174335800	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr4:174295800-174312200	Weak transcription	Brain Substantia Nigra	brain
23	chr4:174295800-174312400	Weak transcription	Brain Angular Gyrus	brain
24	chr4:174296000-174312200	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr4:174296200-174312200	Weak transcription	Brain Cingulate Gyrus	brain
26	chr4:174296800-174314600	Weak transcription	NHDF-Ad	bronchial
27	chr4:174297200-174312400	Weak transcription	Brain Anterior Caudate	brain
28	chr4:174297200-174312400	Weak transcription	Brain Hippocampus Middle	brain
29	chr4:174297200-174318600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr4:174297200-174319800	Weak transcription	Fetal Thymus	thymus
31	chr4:174297200-174333400	Weak transcription	Fetal Muscle Leg	muscle
32	chr4:174297200-174338000	Weak transcription	Esophagus	oesophagus
33	chr4:174297400-174318600	Weak transcription	Colon Smooth Muscle	Colon
34	chr4:174297400-174338000	Weak transcription	Fetal Lung	lung
35	chr4:174299600-174314200	Weak transcription	Osteobl	bone
36	chr4:174299800-174310600	Weak transcription	Stomach Smooth Muscle	stomach
37	chr4:174300200-174312200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr4:174300200-174312200	Weak transcription	Left Ventricle	heart
39	chr4:174300200-174315000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr4:174300200-174318800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr4:174300200-174339000	Weak transcription	Ovary	ovary
42	chr4:174300400-174333000	Weak transcription	Fetal Stomach	stomach
43	chr4:174301400-174318400	Weak transcription	HSMM	muscle
44	chr4:174303000-174312200	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr4:174303000-174313800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr4:174303000-174333200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr4:174303200-174312200	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr4:174303200-174314600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr4:174303200-174318800	Weak transcription	Rectal Smooth Muscle	rectum
50	chr4:174303400-174309800	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links