Variant report

Variant	rs1947878
Chromosome Location	chr4:174265572-174265573
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10005846	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10019585	1.00[ASN][1000 genomes]
rs10025290	0.94[EUR][1000 genomes]
rs10213665	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10866367	1.00[ASN][1000 genomes]
rs11723871	1.00[ASN][1000 genomes]
rs12504141	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12505441	1.00[ASN][1000 genomes]
rs1383629	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1585947	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1585948	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1987522	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2062018	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2288245	1.00[ASN][1000 genomes]
rs2332670	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2332671	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4645199	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4695831	1.00[ASN][1000 genomes]
rs4695832	0.94[ASN][1000 genomes]
rs4695833	1.00[ASN][1000 genomes]
rs4696057	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4696058	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4696059	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4696060	1.00[ASN][1000 genomes]
rs4696062	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4696063	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6822239	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6826267	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6849068	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7655155	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7670317	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7696310	0.93[AFR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7698574	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7699673	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs965931	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs965932	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs967379	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9996063	1.00[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174256800-174280400	Weak transcription	Aorta	Aorta
2	chr4:174259200-174266400	Weak transcription	HSMM	muscle
3	chr4:174259200-174290400	Weak transcription	Thymus	Thymus
4	chr4:174264400-174265600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:174264400-174265800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr4:174264400-174266000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr4:174264400-174266200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr4:174264400-174266400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr4:174264600-174265600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr4:174264600-174265800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:174265200-174267600	Weak transcription	HSMMtube	muscle
12	chr4:174265400-174265600	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr4:174265400-174266200	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr4:174265400-174266400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr4:174265400-174266800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr4:174265400-174267400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr4:174265400-174278200	Weak transcription	Ovary	ovary

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