Variant report

Variant	rs1383629
Chromosome Location	chr4:174266803-174266804
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:174254289..174256182-chr4:174266702..174268342,2	MCF-7	breast:
2	chr4:174260144..174264578-chr4:174266432..174269762,4	K562	blood:
3	chr4:174266584..174269438-chr4:174273432..174276469,4	K562	blood:
4	chr4:174250283..174253078-chr4:174266787..174269458,3	K562	blood:
5	chr4:174266584..174269438-chr4:174273432..174276469,3	K562	blood:
6	chr4:174266320..174268123-chr4:174277725..174279289,2	K562	blood:
7	chr4:174256011..174258184-chr4:174266640..174268269,2	K562	blood:
8	chr4:174266783..174269707-chr4:174275143..174277919,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000248774	Chromatin interaction
ENSG00000164104	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10005846	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10019585	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10025290	0.94[EUR][1000 genomes]
rs10213665	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10866367	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11723871	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[ASN][1000 genomes]
rs12504141	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12505441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1585947	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1585948	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1947878	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1987522	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2062018	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2288245	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2332670	1.00[EUR][1000 genomes]
rs2332671	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4645199	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4695831	1.00[ASN][1000 genomes]
rs4695832	0.94[ASN][1000 genomes]
rs4695833	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4696057	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4696058	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4696059	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4696060	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4696062	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4696063	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6822239	1.00[ASN][1000 genomes]
rs6826267	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6849068	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7655155	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7670317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7696310	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7698574	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7699673	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs965931	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs965932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs967379	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9996063	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174256800-174280400	Weak transcription	Aorta	Aorta
2	chr4:174259200-174290400	Weak transcription	Thymus	Thymus
3	chr4:174265200-174267600	Weak transcription	HSMMtube	muscle
4	chr4:174265400-174267400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr4:174265400-174278200	Weak transcription	Ovary	ovary
6	chr4:174265600-174267600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr4:174266000-174267200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr4:174266200-174267000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:174266200-174267400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr4:174266200-174268800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr4:174266400-174267000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr4:174266400-174267000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr4:174266400-174267000	Enhancers	GM12878-XiMat	blood
14	chr4:174266400-174267200	Enhancers	Osteobl	bone
15	chr4:174266400-174267400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr4:174266400-174267400	Enhancers	NHLF	lung
17	chr4:174266400-174268000	Enhancers	Muscle Satellite Cultured Cells	--
18	chr4:174266400-174268000	Enhancers	NHDF-Ad	bronchial
19	chr4:174266400-174268200	Enhancers	HSMM	muscle
20	chr4:174266600-174267000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr4:174266600-174267000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr4:174266600-174267000	Enhancers	Primary B cells from cord blood	blood
23	chr4:174266600-174267400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr4:174266800-174267000	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr4:174266800-174267400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr4:174266800-174267400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr4:174266800-174267600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr4:174266800-174267800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr4:174266800-174267800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr4:174266800-174267800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links