Variant report

Variant	rs4696063
Chromosome Location	chr4:174287670-174287671
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr4:174287338-174287697	GM12878	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:174252933..174259053-chr4:174284716..174299463,25	MCF-7	breast:
2	chr4:174281901..174284165-chr4:174286721..174288265,2	K562	blood:
3	chr4:174285324..174288488-chr4:174290409..174292288,3	MCF-7	breast:
4	chr4:174250771..174257645-chr4:174286907..174294441,15	MCF-7	breast:
5	chr4:174248778..174262653-chr4:174278408..174298501,82	K562	blood:
6	chr4:174245727..174260507-chr4:174283013..174295498,65	K562	blood:

No data

Variant related genes	Relation type
SAP30	TF binding region
ENSG00000164105	Chromatin interaction
ENSG00000248774	Chromatin interaction
ENSG00000164104	Chromatin interaction
ENSG00000272870	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10005846	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10019585	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10025290	0.94[EUR][1000 genomes]
rs10213665	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10866367	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11723871	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12504141	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12505441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1383629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1585947	1.00[CEU][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1585948	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1947878	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1987522	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2062018	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2288245	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2332670	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2332671	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4645199	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4695831	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4695832	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4695833	1.00[JPT][hapmap];0.91[YRI][hapmap];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4696057	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4696058	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4696059	1.00[JPT][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4696060	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4696062	1.00[CEU][hapmap];0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6822239	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6826267	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6849068	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7655155	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7670317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7696310	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7698574	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7699673	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs965931	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs965932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs967379	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9996063	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174259200-174290400	Weak transcription	Thymus	Thymus
2	chr4:174277600-174289200	Weak transcription	Fetal Brain Female	brain
3	chr4:174279000-174288200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr4:174279000-174290200	Weak transcription	Ovary	ovary
5	chr4:174282400-174290400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr4:174285600-174290200	Weak transcription	Fetal Lung	lung
7	chr4:174286200-174288600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr4:174286600-174288200	Enhancers	HUVEC	blood vessel
9	chr4:174286600-174288400	Enhancers	Dnd41	blood
10	chr4:174286600-174289400	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr4:174286600-174289600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr4:174286800-174287800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr4:174286800-174288000	Enhancers	GM12878-XiMat	blood
14	chr4:174286800-174288400	Enhancers	Brain Germinal Matrix	brain
15	chr4:174286800-174289200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr4:174287000-174288400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr4:174287000-174288600	Weak transcription	Aorta	Aorta
18	chr4:174287000-174288600	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr4:174287000-174290400	Weak transcription	Stomach Mucosa	stomach
20	chr4:174287000-174290600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr4:174287200-174288200	Weak transcription	NHEK	skin
22	chr4:174287200-174288400	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr4:174287200-174288400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr4:174287200-174288400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr4:174287200-174288400	Weak transcription	HMEC	breast
26	chr4:174287200-174288600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr4:174287200-174288800	Weak transcription	Brain Anterior Caudate	brain
28	chr4:174287200-174290000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr4:174287200-174290200	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr4:174287200-174290200	Weak transcription	Brain Cingulate Gyrus	brain
31	chr4:174287200-174290200	Weak transcription	Right Atrium	heart
32	chr4:174287200-174290400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr4:174287400-174288400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr4:174287400-174288400	Weak transcription	Brain Angular Gyrus	brain
35	chr4:174287400-174288600	Weak transcription	Brain Substantia Nigra	brain
36	chr4:174287400-174289800	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr4:174287400-174290200	Weak transcription	Primary T cells from cord blood	blood
38	chr4:174287600-174287800	Weak transcription	Esophagus	oesophagus
39	chr4:174287600-174288000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr4:174287600-174288600	Weak transcription	K562	blood
41	chr4:174287600-174290200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr4:174287600-174290200	Weak transcription	Right Ventricle	heart
43	chr4:174287600-174290400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr4:174287600-174290400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr4:174287600-174290400	Weak transcription	Fetal Thymus	thymus
46	chr4:174287600-174290400	Weak transcription	Left Ventricle	heart
47	chr4:174287600-174290600	Weak transcription	Gastric	stomach

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