Variant report

Variant	rs12505441
Chromosome Location	chr4:174305695-174305696
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:174291603..174294549-chr4:174301460..174306190,5	K562	blood:

Variant related genes	Relation type
ENSG00000164105	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10005846	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10019585	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10213665	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10866367	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11723871	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12504141	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1383629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1585947	1.00[CEU][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1585948	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1947878	1.00[ASN][1000 genomes]
rs1987522	1.00[ASN][1000 genomes]
rs2062018	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2288245	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2332670	0.84[AFR][1000 genomes]
rs2332671	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4645199	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4695831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4695832	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4695833	1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4696057	1.00[ASN][1000 genomes]
rs4696058	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4696059	1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4696060	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4696062	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs4696063	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6822239	1.00[ASN][1000 genomes]
rs6826267	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6849068	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7655155	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7670317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[ASN][1000 genomes]
rs7696310	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7698574	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7699673	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[ASN][1000 genomes]
rs965931	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs965932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs967379	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9996063	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174293400-174321800	Weak transcription	Pancreas	Pancrea
2	chr4:174293400-174333200	Weak transcription	Gastric	stomach
3	chr4:174294000-174323800	Weak transcription	HSMMtube	muscle
4	chr4:174294000-174340400	Weak transcription	Fetal Intestine Large	intestine
5	chr4:174294200-174307600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr4:174294200-174309600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr4:174294200-174334400	Weak transcription	Right Ventricle	heart
8	chr4:174294200-174341600	Weak transcription	Fetal Intestine Small	intestine
9	chr4:174294400-174314200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr4:174294400-174317400	Weak transcription	Lung	lung
11	chr4:174294400-174318600	Weak transcription	Aorta	Aorta
12	chr4:174294400-174320200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr4:174294400-174322000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr4:174294400-174324600	Weak transcription	Thymus	Thymus
15	chr4:174294600-174338000	Weak transcription	Fetal Brain Male	brain
16	chr4:174294800-174318800	Weak transcription	Fetal Brain Female	brain
17	chr4:174294800-174334200	Weak transcription	Primary hematopoietic stem cells	blood
18	chr4:174294800-174336200	Weak transcription	Adipose Nuclei	Adipose
19	chr4:174294800-174341800	Weak transcription	Duodenum Mucosa	Duodenum
20	chr4:174295400-174331400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr4:174295400-174332200	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr4:174295400-174335800	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr4:174295800-174312200	Weak transcription	Brain Substantia Nigra	brain
24	chr4:174295800-174312400	Weak transcription	Brain Angular Gyrus	brain
25	chr4:174296000-174306000	Weak transcription	Stomach Mucosa	stomach
26	chr4:174296000-174306400	Weak transcription	K562	blood
27	chr4:174296000-174312200	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr4:174296200-174312200	Weak transcription	Brain Cingulate Gyrus	brain
29	chr4:174296800-174314600	Weak transcription	NHDF-Ad	bronchial
30	chr4:174297200-174312400	Weak transcription	Brain Anterior Caudate	brain
31	chr4:174297200-174312400	Weak transcription	Brain Hippocampus Middle	brain
32	chr4:174297200-174318600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr4:174297200-174319800	Weak transcription	Fetal Thymus	thymus
34	chr4:174297200-174333400	Weak transcription	Fetal Muscle Leg	muscle
35	chr4:174297200-174338000	Weak transcription	Esophagus	oesophagus
36	chr4:174297400-174318600	Weak transcription	Colon Smooth Muscle	Colon
37	chr4:174297400-174338000	Weak transcription	Fetal Lung	lung
38	chr4:174299600-174314200	Weak transcription	Osteobl	bone
39	chr4:174299800-174308200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr4:174299800-174310600	Weak transcription	Stomach Smooth Muscle	stomach
41	chr4:174300200-174312200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr4:174300200-174312200	Weak transcription	Left Ventricle	heart
43	chr4:174300200-174315000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr4:174300200-174318800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr4:174300200-174339000	Weak transcription	Ovary	ovary
46	chr4:174300400-174333000	Weak transcription	Fetal Stomach	stomach
47	chr4:174301400-174318400	Weak transcription	HSMM	muscle
48	chr4:174303000-174312200	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr4:174303000-174313800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr4:174303000-174333200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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