Variant report

Variant	rs28605939
Chromosome Location	chr4:174191445-174191446
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:174184488..174187723-chr4:174190497..174194400,3	K562	blood:
2	chr4:174190477..174193390-chr4:174201313..174203510,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs17059270	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17059275	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17059297	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28387978	1.00[EUR][1000 genomes]
rs28513634	0.84[AMR][1000 genomes]
rs28581661	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34627061	0.86[ASN][1000 genomes]
rs56774970	0.86[ASN][1000 genomes]
rs59098468	0.86[ASN][1000 genomes]
rs59610063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60501935	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61296981	0.86[ASN][1000 genomes]
rs61445751	0.86[ASN][1000 genomes]
rs6553690	1.00[EUR][1000 genomes]
rs6553691	1.00[EUR][1000 genomes]
rs6810397	0.91[EUR][1000 genomes]
rs6810604	1.00[EUR][1000 genomes]
rs6814914	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6816923	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6824485	1.00[EUR][1000 genomes]
rs6828934	0.86[ASN][1000 genomes]
rs6854376	1.00[ASN][1000 genomes]
rs6856630	1.00[EUR][1000 genomes]
rs72993773	0.86[ASN][1000 genomes]
rs72994576	0.86[ASN][1000 genomes]
rs72994587	0.86[ASN][1000 genomes]
rs72999548	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73001541	1.00[ASN][1000 genomes]
rs73001544	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73001549	1.00[EUR][1000 genomes]
rs73001568	1.00[EUR][1000 genomes]
rs73003329	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73003331	1.00[ASN][1000 genomes]
rs73872518	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7691279	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174159200-174204600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:174171400-174202600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr4:174173600-174202200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr4:174174600-174195800	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr4:174177600-174197800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr4:174179000-174191600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:174186200-174191600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr4:174186200-174194200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr4:174186200-174196000	Weak transcription	GM12878-XiMat	blood
10	chr4:174186400-174191600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr4:174186400-174191800	Weak transcription	Fetal Intestine Small	intestine
12	chr4:174186400-174191800	Weak transcription	Left Ventricle	heart
13	chr4:174186400-174192000	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr4:174186400-174192800	Enhancers	Fetal Thymus	thymus
15	chr4:174186400-174193400	Weak transcription	Primary B cells from cord blood	blood
16	chr4:174186400-174194800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr4:174186400-174196000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:174186400-174196000	Weak transcription	Aorta	Aorta
19	chr4:174186400-174196000	Weak transcription	Fetal Intestine Large	intestine
20	chr4:174186400-174196000	Weak transcription	Gastric	stomach
21	chr4:174186400-174196000	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr4:174186400-174198600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr4:174186400-174208600	Weak transcription	Esophagus	oesophagus
24	chr4:174186600-174191600	Weak transcription	Brain Cingulate Gyrus	brain
25	chr4:174186600-174194200	Weak transcription	Primary hematopoietic stem cells	blood
26	chr4:174186600-174194200	Weak transcription	Stomach Mucosa	stomach
27	chr4:174186600-174196000	Weak transcription	Duodenum Mucosa	Duodenum
28	chr4:174186600-174206800	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr4:174186600-174207000	Weak transcription	Ovary	ovary
30	chr4:174186600-174207000	Weak transcription	Small Intestine	intestine
31	chr4:174186600-174209800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr4:174186800-174191800	Weak transcription	HSMM	muscle
33	chr4:174186800-174193200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr4:174186800-174194400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr4:174186800-174203600	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr4:174187200-174194600	Weak transcription	K562	blood
37	chr4:174187400-174202400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr4:174187800-174192200	Enhancers	Thymus	Thymus
39	chr4:174188800-174194600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr4:174188800-174195800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr4:174189400-174196000	Weak transcription	Primary T cells from cord blood	blood
42	chr4:174189600-174193400	Weak transcription	Dnd41	blood
43	chr4:174189600-174194600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr4:174190000-174191600	Enhancers	Fetal Heart	heart
45	chr4:174190400-174192200	Enhancers	Brain Anterior Caudate	brain
46	chr4:174190600-174192000	Enhancers	iPS-18 Cell Line	embryonic stem cell
47	chr4:174190600-174192200	Enhancers	Brain Germinal Matrix	brain
48	chr4:174190600-174195200	Enhancers	Fetal Lung	lung
49	chr4:174190800-174191800	Enhancers	iPS-15b Cell Line	embryonic stem cell
50	chr4:174190800-174194000	Enhancers	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links