Variant report

Variant	rs73001549
Chromosome Location	chr4:174204157-174204158
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs17059270	1.00[EUR][1000 genomes]
rs17059275	1.00[EUR][1000 genomes]
rs17059297	1.00[EUR][1000 genomes]
rs28387978	1.00[EUR][1000 genomes]
rs28581661	0.95[EUR][1000 genomes]
rs28605939	1.00[EUR][1000 genomes]
rs59610063	1.00[EUR][1000 genomes]
rs60501935	1.00[EUR][1000 genomes]
rs6553690	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6553691	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6810397	0.91[EUR][1000 genomes]
rs6810604	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6814914	1.00[EUR][1000 genomes]
rs6816923	1.00[EUR][1000 genomes]
rs6824485	1.00[EUR][1000 genomes]
rs6856630	1.00[EUR][1000 genomes]
rs72999548	1.00[EUR][1000 genomes]
rs73001544	0.95[EUR][1000 genomes]
rs73001556	0.88[ASN][1000 genomes]
rs73001568	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73003329	1.00[EUR][1000 genomes]
rs73872518	0.91[EUR][1000 genomes]
rs7691279	1.00[EUR][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174159200-174204600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:174186400-174208600	Weak transcription	Esophagus	oesophagus
3	chr4:174186600-174206800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr4:174186600-174207000	Weak transcription	Ovary	ovary
5	chr4:174186600-174207000	Weak transcription	Small Intestine	intestine
6	chr4:174186600-174209800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr4:174191800-174204600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr4:174191800-174205000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr4:174192200-174205000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr4:174194600-174205600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:174195200-174206200	Weak transcription	Fetal Lung	lung
12	chr4:174195200-174207600	Weak transcription	Stomach Mucosa	stomach
13	chr4:174196600-174204400	Weak transcription	Lung	lung
14	chr4:174196800-174210000	Weak transcription	Gastric	stomach
15	chr4:174201600-174211200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr4:174201800-174204200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
17	chr4:174202400-174204200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
18	chr4:174202400-174204800	Transcr. at gene 5' and 3'	Fetal Thymus	thymus
19	chr4:174202800-174204600	Weak transcription	Fetal Stomach	stomach
20	chr4:174202800-174205600	Weak transcription	Dnd41	blood
21	chr4:174202800-174207400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr4:174203000-174204600	Active TSS	Thymus	Thymus
23	chr4:174203000-174206600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr4:174203000-174208600	Weak transcription	Aorta	Aorta
25	chr4:174203200-174204400	Strong transcription	Fetal Intestine Large	intestine
26	chr4:174203200-174214800	Weak transcription	Pancreas	Pancrea
27	chr4:174203600-174204400	Strong transcription	Primary B cells from cord blood	blood
28	chr4:174203600-174207200	Weak transcription	GM12878-XiMat	blood
29	chr4:174203800-174204800	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr4:174203800-174205400	Weak transcription	Brain Hippocampus Middle	brain
31	chr4:174204000-174204200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr4:174204000-174204200	Enhancers	K562	blood

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