Variant report

Variant	rs7691279
Chromosome Location	chr4:174246951-174246952
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:174240982..174243911-chr4:174245243..174249082,5	MCF-7	breast:
2	chr4:174246012..174248721-chr4:174319342..174321970,2	MCF-7	breast:
3	chr4:174245490..174248207-chr4:174393815..174396300,2	K562	blood:
4	chr4:174246578..174248732-chr4:174340112..174342792,4	K562	blood:
5	chr4:174246136..174247718-chr4:174281054..174283423,2	MCF-7	breast:
6	chr4:174245727..174260507-chr4:174283013..174295498,65	K562	blood:
7	chr4:174220269..174222590-chr4:174244769..174248298,3	K562	blood:
8	chr4:174246449..174248006-chr4:174287828..174289785,2	K562	blood:
9	chr4:174237784..174242506-chr4:174245786..174248825,4	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HMGB2-5	chr4:174245758-174247299	NONHSAT099232

No data

Variant related genes	Relation type
ENSG00000164106	Chromatin interaction
ENSG00000164105	Chromatin interaction
ENSG00000272870	Chromatin interaction
ENSG00000242882	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17059270	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17059275	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17059297	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28387978	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28581661	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28605939	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59610063	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60501935	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6553690	1.00[EUR][1000 genomes]
rs6553691	1.00[EUR][1000 genomes]
rs6810397	0.91[EUR][1000 genomes]
rs6810604	1.00[EUR][1000 genomes]
rs6814914	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6816923	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6824485	1.00[EUR][1000 genomes]
rs6854376	0.86[ASN][1000 genomes]
rs6856630	1.00[EUR][1000 genomes]
rs72999548	1.00[EUR][1000 genomes]
rs73001541	0.86[ASN][1000 genomes]
rs73001544	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73001549	1.00[EUR][1000 genomes]
rs73001568	1.00[EUR][1000 genomes]
rs73003329	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73003331	0.86[ASN][1000 genomes]
rs73872518	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4610	chr4:174217026-174252627	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174206400-174249400	Weak transcription	Fetal Kidney	kidney
2	chr4:174210400-174253000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr4:174210400-174253000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr4:174210600-174253000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr4:174210800-174252000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:174215200-174249600	Weak transcription	Left Ventricle	heart
7	chr4:174215200-174254000	Weak transcription	Psoas Muscle	Psoas
8	chr4:174217600-174253000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr4:174222800-174253000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr4:174223400-174250600	Strong transcription	Dnd41	blood
11	chr4:174223400-174251600	Strong transcription	Fetal Thymus	thymus
12	chr4:174223600-174250400	Weak transcription	Hela-S3	cervix
13	chr4:174225200-174250800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr4:174229000-174249200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr4:174229200-174251400	Weak transcription	Rectal Smooth Muscle	rectum
16	chr4:174229200-174252400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr4:174229200-174253200	Weak transcription	Small Intestine	intestine
18	chr4:174229800-174247600	Weak transcription	NH-A	brain
19	chr4:174230800-174249200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr4:174231200-174254000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr4:174233600-174249600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr4:174235600-174253000	Weak transcription	Fetal Brain Female	brain
23	chr4:174235600-174253200	Weak transcription	Colonic Mucosa	Colon
24	chr4:174236000-174253800	Weak transcription	Right Ventricle	heart
25	chr4:174236400-174253200	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr4:174236600-174249400	Weak transcription	Brain Substantia Nigra	brain
27	chr4:174236600-174250600	Weak transcription	Colon Smooth Muscle	Colon
28	chr4:174237000-174250600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr4:174237400-174254200	Weak transcription	Ovary	ovary
30	chr4:174237600-174253200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr4:174237600-174254000	Weak transcription	Esophagus	oesophagus
32	chr4:174237600-174254400	Weak transcription	Pancreas	Pancrea
33	chr4:174237800-174249400	Weak transcription	Stomach Smooth Muscle	stomach
34	chr4:174237800-174253200	Weak transcription	Gastric	stomach
35	chr4:174238200-174249000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr4:174238200-174253200	Weak transcription	Aorta	Aorta
37	chr4:174238400-174253000	Weak transcription	Fetal Intestine Small	intestine
38	chr4:174238400-174254400	Weak transcription	Lung	lung
39	chr4:174240000-174249600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr4:174240000-174251800	Weak transcription	Brain Germinal Matrix	brain
41	chr4:174240400-174250200	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr4:174240400-174253800	Weak transcription	Brain Hippocampus Middle	brain
43	chr4:174240600-174249400	Weak transcription	Liver	Liver
44	chr4:174240600-174249600	Weak transcription	K562	blood
45	chr4:174240600-174251600	Weak transcription	Brain Anterior Caudate	brain
46	chr4:174240600-174251800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr4:174240600-174253200	Weak transcription	Stomach Mucosa	stomach
48	chr4:174240600-174253600	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr4:174240800-174249600	Weak transcription	Fetal Heart	heart
50	chr4:174240800-174253400	Weak transcription	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links