Variant report

Variant	rs11934163
Chromosome Location	chr4:21869551-21869552
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10007968	0.86[EUR][1000 genomes]
rs10008490	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10011276	1.00[EUR][1000 genomes]
rs10021705	1.00[EUR][1000 genomes]
rs10516401	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11930149	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12509804	0.93[EUR][1000 genomes]
rs16871915	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17563311	1.00[YRI][hapmap]
rs1870449	0.91[EUR][1000 genomes]
rs28522334	1.00[EUR][1000 genomes]
rs35388558	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41488744	1.00[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4260532	0.93[EUR][1000 genomes]
rs4328900	0.93[EUR][1000 genomes]
rs9999359	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21862600-21875000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:21868200-21871400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr4:21868200-21871400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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