Variant report

Variant	rs41488744
Chromosome Location	chr4:21846233-21846234
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10007968	0.88[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs10008490	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs10011276	1.00[EUR][1000 genomes]
rs10021705	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10516401	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11930149	1.00[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11934163	1.00[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12509804	0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.93[EUR][1000 genomes]
rs12643656	0.82[JPT][hapmap]
rs16871860	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs16871915	1.00[EUR][1000 genomes]
rs1870449	0.91[EUR][1000 genomes]
rs28522334	1.00[EUR][1000 genomes]
rs35388558	1.00[EUR][1000 genomes]
rs4260532	0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs4328900	0.93[EUR][1000 genomes]
rs9999359	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21840800-21849600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:21846000-21847200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links