Variant report

Variant	rs11936859
Chromosome Location	chr4:94004486-94004487
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:94003469..94006047-chr4:94006139..94009104,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11097359	0.87[AFR][1000 genomes]
rs11097360	0.87[AFR][1000 genomes]
rs11932840	0.83[AFR][1000 genomes]
rs11936792	0.82[AFR][1000 genomes]
rs11939788	0.86[AFR][1000 genomes]
rs11939921	0.86[AFR][1000 genomes]
rs11945891	0.82[AFR][1000 genomes]
rs12643508	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12645241	0.81[AFR][1000 genomes]
rs12646815	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12648623	0.92[EUR][1000 genomes]
rs12648848	0.86[AFR][1000 genomes]
rs12650929	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17020188	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1902436	0.92[EUR][1000 genomes]
rs36072295	0.92[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs55775839	0.87[AFR][1000 genomes]
rs56019979	0.87[AFR][1000 genomes]
rs56119934	0.84[AFR][1000 genomes]
rs56324528	0.87[AFR][1000 genomes]
rs62308220	0.84[AFR][1000 genomes]
rs62308221	0.87[AFR][1000 genomes]
rs62308222	0.84[AFR][1000 genomes]
rs62308251	0.84[AFR][1000 genomes]
rs62308252	0.84[AFR][1000 genomes]
rs62308254	0.94[AFR][1000 genomes]
rs62308256	0.82[AFR][1000 genomes]
rs6821061	0.82[AFR][1000 genomes]
rs6833069	0.92[EUR][1000 genomes]
rs6836612	0.92[EUR][1000 genomes]
rs72665288	0.86[AFR][1000 genomes]
rs72665301	0.84[AFR][1000 genomes]
rs72666908	0.84[AFR][1000 genomes]
rs72666919	0.88[AFR][1000 genomes]
rs72885778	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72885784	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72887624	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72887644	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7437416	0.82[AFR][1000 genomes]
rs7667251	0.92[EUR][1000 genomes]
rs7669480	0.86[AFR][1000 genomes]
rs7683817	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs977954	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007177	chr4:93834536-94155349	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv537186	chr4:93834536-94155349	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv931937	chr4:93869856-94155348	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1011740	chr4:93904073-94073963	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3374790	chr4:93959718-94063251	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv999660	chr4:93982635-94107714	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:93999400-94005800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:94002200-94006000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr4:94003400-94005600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr4:94003600-94005400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr4:94004400-94004600	Enhancers	HUES48 Cell Line	embryonic stem cell

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